BAC Information

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BAC

Clone NameMSMg01-363P18
Chromosome1 (Build37)
Map Location 149,781,755 - 149,782,275
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P18.T7 (MSMg01no363_p18.b1)MSMg01-363P18.TJ (MSMg01no363_p18.g1)
ACCAG472290AG472291
length1,642740
length of high quality
(start - end)		---521 (82 - 602)
definitionCHROMAT_FILE: MSMg01no363_p18.b1 PHD_FILE: MSMg01no363_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:54 2005CHROMAT_FILE: MSMg01no363_p18.g1 PHD_FILE: MSMg01no363_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCGAGACGAGCGCGAGAGCATTACACTGTATAACGTCTCTACAAGCAA
TACACTCCAGACAACATACCCTCCGGAACGCACTATTCGTCTCAGCGACT
ATCGAAGGTATGATGGCGTAGTGTTGACTAATACATTGTTCAATATGGGG
AAGTCACGAGCNCAGCACGCGAGCTAGTTACGCATGTTGTTGCGACCATC
ACGTACTGGATCACGGCGTCACGCGTACGCGAGGCTGATTCGCGATGAGC
GCCACCGAAGTANCGCGAGGCGTAGAGCTGAGAGGCGTGGAGTCGCGTCC
CTCGAGAGAGGTGGGATATCGGGACCGCATAGCTCCGGACCATTATCATA
CGACGCGCTGTCCGCGCGGCGCAGTATCAGATATCTCGACGCGTGCCTCA
ACGTTTCGCGTGCGCTACCGATGATGTTATCTNATTGTTGTTGACACTGC
GCGTCGATGCGATTGACGGCGGGATATANGTCTGCGAGCGATGCGCGAAT
GGCGCCGCGCCGTCACACCATGACCAGCAATCGCATCGTGCGGNGAGCNC
ACTCTATAATTCAATTGAGTCGCTAGGGCCGCCGCCGCGTGCTCTAGTGA
CGGTCGAATATTAGTGTACGCCCGAATGGGCCGACGTCTCGATGATCTTG
TATTCGCGACTATGCTCGTGTNGACTGCGCGCATATATTTNATTGGTCAG
TACACGGCCGGTATGCCACGGCGATCCAGCGGTCCTGCCGCCTGGTACGT
ATCATCTCCATCCGATGCTGCAGATCTGTTCTGTCGTNCTGGTCCGGCTC
GTATNGCTATTTCTACATGCACGCATACGAGATCTATTAGCATCGTGTCG
CTTATACACGACTGTGTCGCGTCTATCGCGGCACGGTCGTCCTCGCATCA
TGTGTTCTCACGTATACATCGATCGCGATTCACGGCTCTCGATCTTCGGC
ACGGCTTTGGTCGAGATTGACTCACGGCTNCATAGGACTCAACTCGCTGA
GTGCGCTACTGCCTCTTGACGTCCCTCATAGCATGATTTACGACGTCCAC
TGAGACTGTTGAAGAGATGCGCGACAACAGTGCATTAGAACGGAGCTACG
TGCCATGTGACTGTCGGCGCCGCTGCGCGCTGCGGCGCCGTGTGATGCAG
TATAATAGTATGCACTATCGAGCCGCAGACGCGAGGCNTGCATCCGATCT
ATCGCACACTCGATGAGCAGTCGTAGTCNGCGTATTATCTGCGAGTGTCG
CTCATGCAGTCGCGACGTNCNCGCTCGCGACTCTAACGATANTAGCATAT
CCATAACAGTTGAGCGCGCTTATGAGCTACGNGNATCANACGGATGGGTC
TGCTATCTTCTGTCGCTCCGCACTCATATATATANCAGCAATCGATGCGA
CGCGNGCGCATATCCGCTGTATCATCGATACGTGTATNTATACCGACGAT
ANTNATTCGTCGTCGTCATCTCTGCGTGTNGNGTNGCGCGTCGTCTCAGG
TCGNTNCGTATTGTGGACCGATGTATTNCATACGTAGACGNTGATAGATC
GCCGCACTGCTCTTATTGTCAGCATCACGCTCCGANGGCGCCTCNGTCGT
ACATCANCGTCTATTATGCGTCGTGTGCTATGCGCATGTCTN

NTTTCTGCTATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTTAAGTAAACTTTT
GCTCTTTCACATACATAACTATTTGTCTTCTAGATTATGATGAATTTTGA
CTTCTTAATTTCTTGCTTTCTTTATGTTAGATATTGTGTATACCTTCATC
TCTTCTCTAATGTCTTGTTACATATTTTGTTGTGTCAGGCCAAAGAACCA
ACATCAAATAATAGTTTACTGTTTCACCAAAACTTCTTTTTATGAATGAG
GACTATGGGAGACATTCAAATATCAAATATACATAATTTTACAAACTCTT
ATTTTTGTCCTTAGTTCTAAGGCATCAAAAGCAAACTGTATTGCCACAGG
ACATGTTTATACATTTGCTTGTTTGCACATTTTTAATAAATATTGATATT
TTCTTTAGGTAATGTACAGTCAATTTTGAAAATGTAAGTGAATATTGTGA
CTGCAAAAATAATATTGTTACTCTAGCTTGTTTCTTCAGAACGTTGCTTG
AAAAATTGTTTTCCAGCCTTTCATTCTGAGGTAGTGACTGTCTTTTTTCC
CTGAGGTGGGTTTCCTCTAAGCAGCANAATTTTTATTCCTGTTTGTGTAG
ACAGTCTGTTAAACTATGTCTTTTTTATGGGGAATTGAGTCCCGTGTTAT
TAAGAGATATTAAGGGTAAGTTACTGGTTGCTTTCCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p18.g1 MSMg01no363_p18.g1 CHROMAT_FILE:
MSMg01no363_p18.g1 PHD_FILE: MSMg01no363_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:54 2005
         (521 letters)



>mm_chr1_149781648_149782568
          Length = 921

 Score = 1000 bits (517), Expect = 0.0
 Identities = 520/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcacttaagtaaacttttgctctttcacatacataactatttgtcttctagattatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgcacttaagtaaacttttgctctttcacatacataactatttgtcttctagattatgat 569

                                                                       
Query: 61  gaattttgacttcttaatttcttgctttctttatgttagatattgtgtataccttcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaattttgacttcttaatttcttgctttctttatgttagatattgtgtataccttcatct 509

                                                                       
Query: 121 cttctctaatgtcttgttacatattttgttgtgtcaggccaaagaaccaacatcaaataa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 508 cttctctaatgtcttgttacatattttgttgtttcaggccaaagaaccaacatcaaataa 449

                                                                       
Query: 181 tagtttactgtttcaccaaaacttctttttatgaatgaggactatgggagacattcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tagtttactgtttcaccaaaacttctttttatgaatgaggactatgggagacattcaaat 389

                                                                       
Query: 241 atcaaatatacataattttacaaactcttatttttgtccttagttctaaggcatcaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcaaatatacataattttacaaactcttatttttgtccttagttctaaggcatcaaaag 329

                                                                       
Query: 301 caaactgtattgccacaggacatgtttatacatttgcttgtttgcacatttttaataaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaactgtattgccacaggacatgtttatacatttgcttgtttgcacatttttaataaat 269

                                                                       
Query: 361 attgatattttctttaggtaatgtacagtcaattttgaaaatgtaagtgaatattgtgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attgatattttctttaggtaatgtacagtcaattttgaaaatgtaagtgaatattgtgac 209

                                                                       
Query: 421 tgcaaaaataatattgttactctagcttgtttcttcagaacgttgcttgaaaaattgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgcaaaaataatattgttactctagcttgtttcttcagaacgttgcttgaaaaattgttt 149

                                                    
Query: 481 tccagcctttcattctgaggtagtgactgtcttttttccct 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tccagcctttcattctgaggtagtgactgtcttttttccct 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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