NNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAATTACAAGCCAAAAAAAAAAACCTCATAGAGATAAAAATAT
ATCTCATACCAAGTGATGGATTTTGAACTGCAAACCACATATCAGACTTA
GTTCTCAACCATTTCTTTTTTCCTGTGAAATTTAAAACCAGAGCATCGGA
TTGCTTCTCACCATTAAAAAATTCCCATATTTAATTTCACCAAGAAAGCA
TGTTGACTCTGGTGTCCAGATCAAATGGCCCTCTGAAAGGAATGTCTTTC
CCTGTCAATCACACAGAACCACTATTGTGCTAGGCAGGAAGTGGCCTTGG
TGTATTCAGCTCTGCTTCTTTGCTGCACTTGACTTCTCCAGATGACACTC
TCCTCTCCTCTTAACTCTACAAATCTATGAAGATTTGCTCATGAAGTTGC
TTTGACTCATAAAATAAAACACAGGCTCCATATTTTTCTTCAAATCGGGA
AGAAAAGGCTCATTTGACTGAACTGTTTTCCAGATCATATCCCATCCTTG
NAAGGGGGCAGGACAGGAATTCAGGTAGGGCTGGAACCTTGCTGGCAGAC
CTGATGCAGGGGCCCTGGAGGGGGGCTGCCTAAATGGTGGCCCCCACGGG
TGGTCACCTGCTTTCTTATAAAACCCAAAACCCTCACCCCCGGGGGGGCC
CCCCCCCCGAGGTTGGGGTTCCTTTCTGTCCCTCAATTGAAAAAAAACTT
ACCCTTTGATTCCCAAAAGCCCTTTCTCTCCCAAGGT

NCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGACCAACCAAGTTTTTAGAAACA
AAAGAATGTCATCATTTTATAGAAGAAAAAACCATTTCTCCCACAAAACA
TTGCTTTTAGCAGTTCATCTGGGATGGACATTATGGTTCTCATTAGTTGA
TTACTGAGAATGATGAAGCAGTGAACATGGCTGTGCAGATATTCTTAACA
GNTCGGTGGATTTCCTTTGGATGAATTCTGAGTACCAAGGCCTGCTGATA
AGGGTCCTTAAAAATGGTTAAAGAAATTTTAAGTTTTAGGTTAAGTTTTT
TCTACTCNCCCTTTTTTTTTCTCCCTCTTCCCTTCCTNCCCCCCCCCNCC
CTCNTCTCTTCNTNACTCCCCCCCCCCCTTTCCTCNCCCAANCCGTGTTA
CAAGGAAAGGACTAAGGAGAAAGGGAGGGGGGGGAGGGGGGAGGAGAGGG
GAAGGGAGGGGGGGAGAGGGGGGGAGGGGAAGAGGGGGGGGGGGGGTATN
TCCCCTNNTTTCCATTTTGGNNTNAGAGTCTAGGGGGGGGGGGGGGGGGT
GTTCTACCCNNNTTTCCNTCCTCTCCACTTCCTTTCTCTTCTCCATAAGA
GAAGGGCTTGGNNNNNCNACCCCCCCCCNNNCCACCCCNNNCNNCCTCCC
TCTCTCACTTCTTCTCCTTTTTCTTTCTTCTTTTTTTAACTGAGTCCTCT
TTTNNNNNNCNNNTTTATCCCTCCACTTTAGTTGAGAGGGTGGGGGGG

Query= MSMg01no364_a16.b1 MSMg01no364_a16.b1 CHROMAT_FILE:
MSMg01no364_a16.b1 PHD_FILE: MSMg01no364_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:59 2005
         (445 letters)



>mm_chr1_22621781_22622627
          Length = 847

 Score =  810 bits (419), Expect = 0.0
 Identities = 437/443 (98%), Gaps = 2/443 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaattacaagcc-aaaaaaaaaaacctcatagagataaaaatatatctcatacc 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaattcaaattacaagccaaaaaaaaaaaacctcatagagataaaaatatatctcatacc 588

                                                                       
Query: 64  aagtgatggattttgaactgcaaaccacatatcagacttagttctcaaccatttcttttt 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aagtgacggattttgaactgcaaaccacatatcagacttagttctcaaccatttcttttt 528

                                                                       
Query: 124 tcctgtgaaatttaaaaccagagcatcggattgcttctcaccattaaaaaattcccatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tcctgtgaaatttaaaaccagagcatcggattgcttctcaccattaaaaaattcccatat 468

                                                                       
Query: 184 ttaatttcaccaagaaagcatgttgactctggtgtccagatcaaatggccctctgaaagg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 467 ttaatttcaccaagaaagcatgttgactctggtgtccagatcaaatggccctctgatagg 408

                                                                       
Query: 244 aatgtctttccctgtcaatcacacagaa-ccactattgtgctaggcaggaagtggccttg 302
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 407 aatgtctttccctgtcaatcacacagaacccactattgtgctaggcaggaagtggccttg 348

                                                                       
Query: 303 gtgtattcagctctgcttctttgctgcacttgacttctccagatgacactctcctctcct 362
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 347 gtgtattcagctctgcttctttgctgcacttgacttctccagatggcactcccctctcct 288

                                                                       
Query: 363 cttaactctacaaatctatgaagatttgctcatgaagttgctttgactcataaaataaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cttaactctacaaatctatgaagatttgctcatgaagttgctttgactcataaaataaaa 228

                                  
Query: 423 cacaggctccatatttttcttca 445
           |||||||||||||||||||||||
Sbjct: 227 cacaggctccatatttttcttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 847
Length adjustment: 10
Effective length of query: 435
Effective length of database: 837
Effective search space:   364095
Effective search space used:   364095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)