BAC Information

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BAC

Clone NameMSMg01-364I18
Chromosome1 (Build37)
Map Location 28,699,114 - 28,699,517
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040952, EG433281, EG665903
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364I18.T7 (MSMg01no364_i18.b1)MSMg01-364I18.TJ (MSMg01no364_i18.g1)
ACCAG472719AG472720
length794786
length of high quality
(start - end)		369 (48 - 416)404 (80 - 483)
definitionCHROMAT_FILE: MSMg01no364_i18.b1 PHD_FILE: MSMg01no364_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:41 2005CHROMAT_FILE: MSMg01no364_i18.g1 PHD_FILE: MSMg01no364_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCTGTGAACTTTTCACAGGTTCATAAAGATTAGAGCCTTCAGAG
CCATGGTGGGTTATTGGTTGTTTGCTACCTGTTGCTGGTGTTTGTGGTTT
GCTAAGTGGACATGTGCAAAGAAGAGAGAACAACGAGGAAATTAGATATC
CCAATGGTAAAGATCAAATGTGCCCCAAAGGAACTCAGCCTCCCTAATCA
GTAGGAAATGCCTATCAATAACATCTCCTTTCCCCTCTATCCCTTTTGTC
TCTCTTAACTAGTGTTAGGGGACTGAAAGGATGGAAGAAAAGGGGTAGGG
AAGGTTGGAAGAAAGAAGACCCTACACATTTGCTAAAGACTAGGTATAGA
CACATGAACAGAAATCTCTAGAAGGAATATCCACACTTCAGTCTGCAGGA
AGAACAGAGGTGAGAGTAGCCTGAGCTGTCTGCCTGAAACTCCAGACCAT
ATGAACAGGGTGTGATATAGGTCCTTAAGGACCACTGTGGTTCCCTGGAT
CAAATTGTCTTTCTGAAATGGGGTTGATTCCTCATAAATTTTTCAAAAAT
ATCTCCGCCCCCCCTCTAAGTCCACTCTTTTTTTTTTGTTCCCTCCCGTT
TTTAACTAACTTTTATTCTTGCTTATCTCTATTCTTTCTTATTTTCCCAC
TCCTTTCCCCTTTCTCTTCAACCTACTTAATTCCCCCCTTTTTCTATTTT
TTTTCCCCCTTTTTTCTCTTCCTTTTCCTCTCACTTCCCTTTTG

NNTTCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCATTGTTCTAATTTCAA
TAAAATTACACTAGCTTCAAAGAATATTTTAAACTTAGGCCTGTATATGC
ATTTAGACAGAGAACTTGCATGATGTGATCTGTGGGTGAAAGTTGATCTC
AGTCTTCAAGCATTAAACATTTATAGTTTATTTTAGAAGAACTATAATCT
TAGTCACTTGATTTCAAGAATGTCTGACCATTGTGTCATAAATAGATTTG
AAGAAAAATATCAGCATTCTTTTAAATTTTTATCAACTTGCAAATAGTAT
TGAAATCTTGAAAAGTAAATATTTTATTGAGATAACTTCACTTTCTCAGC
TGATTTCAAATCACAATTCAAGGGAACATGAAGTAAGGCTTGGTCCTCAA
AATTTAGAGTGAAGGATGTCCAAAATCCTGAGAGTTTTAACTAATGATGT
GATAATTATTTACAGCAGGCTGTTGAGAGAAAGGACAGGGAAAAAAAATC
CGCGGCTTTCATTTGCTGACTTCCCTTAAGGAAAAAAAGCCTTTAAATGG
TCATTTCCCACTGGCTCCTTGGGTGGCTGGGAGAATAATTGTTAAGGAAA
ATTCAAAACCTCCTCCTTTGTTTTCCAAAAAAAAGTTCCAAGGGTTTGCC
TTCTATAAATGTGTGTATGTGCCCGTCCCCCATTCTCCTCCAATATTTTT
TCTTTTTCATAACTGGACATTTTCCTTTCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_i18.g1 MSMg01no364_i18.g1 CHROMAT_FILE:
MSMg01no364_i18.g1 PHD_FILE: MSMg01no364_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:41 2005
         (404 letters)



>mm_chr1_28698914_28699717
          Length = 804

 Score =  721 bits (373), Expect = 0.0
 Identities = 397/405 (98%), Gaps = 2/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagcattgttctaatttcaataaaattacactagcttcaaagaatattttaaacttagg 60
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ctagaattgttctaatttcaataaaattgcactagcttcaaagaatattttaaacttagg 260

                                                                       
Query: 61  cctgtatatgcatttagacagagaacttgcatgatgtgatctgtgggtgaaagttgatct 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtatatgcatttagacggagaacttgcatgatgtgatctgtgggtgaaagttgatct 320

                                                                       
Query: 121 cagtcttcaagcattaaacatttatag-tttattttagaagaactataatcttagtcact 179
           ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||
Sbjct: 321 cagtcttcaagcattaaacatttatatattt-ttttagaagaactataatcttagtcact 379

                                                                       
Query: 180 tgatttcaagaatgtctgaccattgtgtcataaatagatttgaagaaaaatatcagcatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatttcaagaatgtctgaccattgtgtcataaatagatttgaagaaaaatatcagcatt 439

                                                                       
Query: 240 cttttaaatttttatcaacttgcaaatagtattgaaatcttgaaaagtaaatattttatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttttaaatttttatcaacttgcaaatagtattgaaatcttgaaaagtaaatattttatt 499

                                                                       
Query: 300 gagataacttcactttctcagctgatttcaaatcacaattcaagggaacatgaagtaagg 359
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 500 gagataaattcactttctcagctgatttcaagtcacaattcaagggaacatgaagtaagg 559

                                                        
Query: 360 cttggtcctcaaaatttagagtgaaggatgtccaaaatcctgaga 404
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttggtcctcaaaatttagagtgaaggatgtccaaaatcctgaga 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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