BAC Information

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BAC

Clone NameMSMg01-364J14
Chromosome1 (Build37)
Map Location 38,516,929 - 38,657,727
singlet/doubletdoublet
Overlap geneAff3
Upstream geneMgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364J14.T7 (MSMg01no364_j14.b1)MSMg01-364J14.TJ (MSMg01no364_j14.g1)
ACCAG472758AG472759
length809764
length of high quality
(start - end)		218 (73 - 290)412 (78 - 489)
definitionCHROMAT_FILE: MSMg01no364_j14.b1 PHD_FILE: MSMg01no364_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:46 2005CHROMAT_FILE: MSMg01no364_j14.g1 PHD_FILE: MSMg01no364_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,516,929 - 38,517,146)(38,657,316 - 38,657,727)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGC
GGAATTCCACTCCTATTTACCAGGGAGCTGCCTTGAGAAACAACGCATTT
CAGATCTAGAGCTGTAGAATTGCAAGAGAATTCTAGAACACCTTGTACCA
AACACAGGAATAACGAGGGTATGTCTAATGGAAAAGAACTAGCCCAAAGG
GCATCTTCTACTGGCTGAATGTAGAAATGGTAAAAACAATGTGGGTGAAT
GGCCACCATCTAATTAATGAAGCACAGCTCCATGAGTTCATNAGCATTAA
GTATATTTGAAAGGTAAAAGGGAAAAGTTTTTTGTTACCAGGGAATGCTA
AGTAGTAAACGGAAAAATGCCTATTATTTTACCCGGAAGTCTGGAACCCT
AAAAAGAACTTTTGAGGGAAAAGGGGCCCGGGGANGCCTGGGGGAAGGGG
GAGCCCCCCCGGTTTTTTGGGACCCCCCCTGGTAAAACTTCGGGGGGTCC
CTCCGTATTTTTTGGTACACTTCTCTTTAACTTATATGGGGGCGCGCCCC
TTCCCTCTTTTTTTATTTATTTTTAAAGCGTGGCAATTTTTTTCTCTAAC
TTTTNNNCCNTNTTNTGNNNNNNTTTATATGTATTATTTTTATGTCCCTT
GTAGTGGCGTTTGTATTATANNTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCATCCCTCCACTCCT
TTACTTTTGTTATTTTTTTTTCCTCATTCCTTTTCTCATCCGCTCTATGC
TTCTTCTCG

NNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCAGGACACCCTTGGGGAAC
CGTTTTTCTCCCTACCACACATACATATTGTTGATAGTTCTGTGTGACCT
GCTCTTTCCTCTCTGGGAAGAAATATTGTTAGAACATTCAATCACCTTTA
TCACTCACAGGGGACCATCGACCATCGGCTTCCCAGATCCAGCCTCTGGT
GTCCCAGCAGGAGATTAACAGGAAAAGGGAGAGAGTAGGGCAAGAACCAC
ACATCAGAGAGGCAGTTTTACCTCCTCATCTCAGGGCAGGGGTGTGGAGG
GAGAGGTAACCCGGCTTCTCGAACGGGAGCTGCAGCTCTTTGAGACGGTC
ATCTAGGCTATGGTGGGACACTAGGTTTTAAGCTATCTGTGACTCTACAC
TGGTCATACCATCTTTGATAGAGAGGTGTTTCTGTCTATGATGGAAAGGT
TCAGGAGGTTAGCCTTTCCTCCCTGGGAAGTTATCTGAATTTCTTGGTAT
GAAAGAAATCTTTCCTCCACTCTGAAATGAACCGGAAATTCGCTTTCTCT
CTTGTCGTGGAAACCTTATAAGCGGGTTCCTTTATCTCATGGGGGGTTTT
TCCGTCCGTTTTTATTTTTTCAAAATTTTTCTCTCTATTTCTACTCAATT
TGGCCTTTTTCTGGTTTCTTCACATTCTTCGTATTACTGTTGGTGTGTCC
TACATTCTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_j14.b1 MSMg01no364_j14.b1 CHROMAT_FILE:
MSMg01no364_j14.b1 PHD_FILE: MSMg01no364_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:46 2005
         (218 letters)



>mm_chr1_38516729_38517346
          Length = 618

 Score =  414 bits (214), Expect = e-120
 Identities = 217/218 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagctgccttgagaaacaacgcatttcagatctagagctgtagaattgcaagagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagctgccttgagaaacaacgcatttcagatctagagctgtagaattgcaagagaatt 260

                                                                       
Query: 61  ctagaacaccttgtaccaaacacaggaataacgagggtatgtctaatggaaaagaactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctagaacaccttgtaccaaacacaggaataacgagggtatgtctaatggaaaagagctag 320

                                                                       
Query: 121 cccaaagggcatcttctactggctgaatgtagaaatggtaaaaacaatgtgggtgaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaaagggcatcttctactggctgaatgtagaaatggtaaaaacaatgtgggtgaatgg 380

                                                 
Query: 181 ccaccatctaattaatgaagcacagctccatgagttca 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccatctaattaatgaagcacagctccatgagttca 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no364_j14.g1 MSMg01no364_j14.g1 CHROMAT_FILE:
MSMg01no364_j14.g1 PHD_FILE: MSMg01no364_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:46 2005
         (412 letters)



>mm_chr1_38657116_38657927
          Length = 812

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcaggacacccttggggaaccgtttttctccctaccacacatacatattgttgatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagcaggacacccttggggaaccgtttttctccctaccacacatacatattgttgatag 553

                                                                       
Query: 61  ttctgtgtgacctgctctttcctctctgggaagaaatattgttagaacattcaatcacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttctgtgtgacctgctctttcctctctgggaagaaatattgttagaacattcaatcacct 493

                                                                       
Query: 121 ttatcactcacaggggaccatcgaccatcggcttcccagatccagcctctggtgtcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttatcactcacaggggaccatcgaccatcggcttcccagatccagcctctggtgtcccag 433

                                                                       
Query: 181 caggagattaacaggaaaagggagagagtagggcaagaaccacacatcagagaggcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caggagattaacaggaaaagggagagagtagggcaagaaccacacatcagagaggcagtt 373

                                                                       
Query: 241 ttacctcctcatctcagggcaggggtgtggagggagaggtaacccggcttctcgaacggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttacctcctcatctcagggcaggggtgtggagggagaggtaacccggcttctcgaacggg 313

                                                                       
Query: 301 agctgcagctctttgagacggtcatctaggctatggtgggacactaggttttaagctatc 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 312 agctgcagctctttgagacggtcatctaggctgtggtgggacactaggttttaagctatc 253

                                                               
Query: 361 tgtgactctacactggtcataccatctttgatagagaggtgtttctgtctat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtgactctacactggtcataccatctttgatagagaggtgtttctgtctat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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