BAC Information

Click to search

BAC

Clone NameMSMg01-364L08
Chromosome1 (Build37)
Map Location 6,222,435 - 6,222,863
singlet/doubletsinglet
Overlap geneRb1cc1
Upstream geneEG636659, Oprk1, Npbwr1, 4732440D04Rik
Downstream geneEG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364L08.T7 (MSMg01no364_l08.b1)MSMg01-364L08.TJ (MSMg01no364_l08.g1)
ACCAG472840AG472841
length815793
length of high quality
(start - end)
425 (73 - 497)439 (80 - 518)
definitionCHROMAT_FILE: MSMg01no364_l08.b1 PHD_FILE: MSMg01no364_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:55 2005CHROMAT_FILE: MSMg01no364_l08.g1 PHD_FILE: MSMg01no364_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCTCAATGGATTACCGTCGAATGGCCAAGAAGTGCCTAAAGAAAT
GTTCAACATCCTTAGTCATCACGGAACTGCAAATCAAAATGACACTGAGA
TCCCACCTCACATCAGTTAGAATAGATAAGATTAAAAACTTAGGTGACAG
CAGATGCTAATAAGGATGTGGAGAAAGAGGAACACTCATCCGTTCCTAAT
GAGATTGCAAGCTGGTACAACCATGCTGGAAATCAGTCTAGGATTGCAAG
CTGGTACAACCATGCTGGAAATCAGTCTGGCAGTTTTTCAGAAAATTGAA
TATAGTACTATCTGAGGACCCAGCTCTAGCACTCCTGGGCATATACCCAG
AAGATGCTCCAACATGTAATAAGGACACATACTCTACTATGTTCATAGCA
GACATATTTATAATAGCTAGAAGCAGGAAACAACTCAGATTTCCCTCCAG
AGAGGAATAGATACCGAAAATGTGATACCTTTACACAATGGAAAACTACT
CAGCTATTAAAAACAATGACTTCCACTTTATATGCCCCTTCACAGGGGTA
ACGCCATGTTCTCCCATGTGCCTCTGGTTTGTTTTTCTCTTTTTTCCTCG
CTCTCCTTTTTTTCCTGATCTGTATTCTTCTTTACCCTTTCGTCTAATAC
CTCCTTCTATATTTCTCTTTATCCTCCCTCTCCGTTTCTTTTTTCTGTCC
TCGCTTTTTTTCGCTTTAAGTCCCTACTTACTATTTATCCAGCTTCTTAC
TCTATCATTAATATT
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACAGCTAAAGTGCTACCT
GTACAAGCAAAAGGCCTTGAGTTTAAATTCCCATGACTCATATAAAGGCA
GTGTGCTGGTCCAAGTCTGTAACCCCAGTTCTAGGGTAGCAAGGGGACAT
TCAGATACCTCCAGACCCCTGGGATGTATTGACTAGGCAGGCTAGCCAAA
TCAGAAAGCTCTAGATTCAATGAAAGCTCCTACCTCAATGGTGAAAAGAA
AGGATGGGGGTAACAGAGTAAGACATGACACATCTACACACATGACCAAC
ACTCATAAGCCTACACCATGAATGAAACTAAATAATTGTGCATTTATGTG
TACTTGGCATATACTGGGTATGTTCACCTGTGCCTGCATGTAGACATGGG
AGGTTAATGCTGAATGTCCTCCTCCATTGCTTTTCTACCACATTTTGAGA
TGGGGTTTCCTATTGAACCTAAAGCTCACTATTTGGCTAGATTGATTGTA
CAGCAAGGGCCATGGATTCATCTGTCTTCTCAGGCTCTCGGAGGTTACGG
GCACACATTTGTAAACGTCATTGTATTGGTTTTTCCAAATCCAGATCCTC
TGGTTCTCTAAACAAAAAACTTCCGAAAGTTAAATTTCTCAGCCCTCTTT
ATATTCCTCCTCTTAATACACTGCTTATTTATCTCGTTTTTCTTTTATTC
TCTTTCTCTCTCACTCTATTTTTTCTTACTTGTTCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_l08.g1 MSMg01no364_l08.g1 CHROMAT_FILE:
MSMg01no364_l08.g1 PHD_FILE: MSMg01no364_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:55 2005
         (439 letters)



>mm_chr1_6222026_6222863
          Length = 838

 Score =  808 bits (418), Expect = 0.0
 Identities = 427/430 (99%), Gaps = 1/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  aaagtgctacctgtacaagcaaaaggccttgagtttaaattcccatgactcatataaagg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaagtgctacctgtacaagcaaaaggccttgagtttaaattcccatgactcatataaagg 779

                                                                       
Query: 70  cagtgtgctggtccaagtctgtaaccccagttctagggtagcaaggggacattcagatac 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cagtgtgctggtccaagtctgtaaccccagttctagggtagcaaggggacattcagatac 719

                                                                       
Query: 130 ctccagacccctgggatgtattgactaggcaggctagccaaatcagaaagctctagattc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctccagacccctgggatgtattgactaggcaggctagccaaatcagaaagctctagattc 659

                                                                       
Query: 190 aatgaaagctcctacctcaatggtgaaaagaaaggatgggggtaacagagtaagacatga 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aatgaaagctcctacctcaatggtgaaaagaaaggatgggggtaacagagtaagacatga 599

                                                                       
Query: 250 cacatctacacacatgaccaacactcataagcctacaccatgaatgaaactaaataattg 309
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 598 cacatctacacacatgaccaacactcataagcctacaccatgcatgaaactaaataattg 539

                                                                       
Query: 310 tgcatttatgtgtacttggcatatactgggtatgttcacctgtgcctgcatgtagacatg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgcatttatgtgtacttggcatatactgggtatgttcacctgtgcctgcatgtagacatg 479

                                                                       
Query: 370 ggaggttaatgctgaatgtcctcctccattgcttttctaccacattttgagatggggttt 429
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 478 ggaggttaatgctgaatgtcctcctccattgc-tttccaccacattttgagatggggttt 420

                     
Query: 430 cctattgaac 439
           ||||||||||
Sbjct: 419 cctattgaac 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 838
Length adjustment: 9
Effective length of query: 430
Effective length of database: 829
Effective search space:   356470
Effective search space used:   356470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)