BAC Information

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BAC

Clone NameMSMg01-364L10
Chromosome1 (Build37)
Map Location 172,694,345 - 172,694,732
singlet/doubletsinglet
Overlap geneAtf6
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364L10.T7 (MSMg01no364_l10.b1)MSMg01-364L10.TJ (MSMg01no364_l10.g1)
ACCAG472844AG472845
length794786
length of high quality
(start - end)		448 (46 - 493)431 (80 - 510)
definitionCHROMAT_FILE: MSMg01no364_l10.b1 PHD_FILE: MSMg01no364_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:55 2005CHROMAT_FILE: MSMg01no364_l10.g1 PHD_FILE: MSMg01no364_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGG
AATTCTCACCTGAGGTATCCCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGTAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACGGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTTATAAAAAAGAGTTTATGAAATTCCTAGCCAAA
AAAATTTTTTTTTTTTGGGGCTAATTTTAGATTCCCCGAAAAGTTGGAAA
ATCCATAAAGATTTCCCGGGGTTTCCGTTTCCCATTTTTTCTTATGGTAA
ACCACCTTAACCCTCCCTGGGTTCCGTAATTAAAAAAAATAAGGGTAGAG
TCTTTGGTTTTCTCTTGTACAAGGAGCTTTTCCTAGTATAATTCCCTGCT
TGGTTCCCTTCTCGTTATCCAAATTTCTGTGTTTGCTCTGAAAA

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAGTTAACCTAACATTTC
CTCCAGGGGGAGAATTTTGTTCTGTGAAGTTGAGAAAAGTTGATTTTCTT
TTTTTTAGAATACACTGTAATTTTTTCCCAACTAAAGATTATGTAAAGAA
CCAATATGGTTTCTAAATTTATATGTTAAGATAACTTTATTTTGTCCATA
AAAAATGTTCCTTACTAGGGCTAGGGAGGTGGCTCAATGGTTAAGAGTAC
TTCTTATTCTTCCAGAAGACCTGAGTTCTCTTACCTACACTGAAGGAACA
GCAGCTCACAACTGCCTGTACTTCAGCTCCAGGGATCCAACATGTCCTTC
TGGCACCTGAGGGTATACCCCGCACATGTGGCATGCATTCACACATACAC
TTGTAGTTAGAATTCTGGAATGTTGGTTTCTTTANAAAATAGAAATATAA
GAATATGTTTTTGTTTTAATCCCAGGTGTGGGGATGTGGCACTGCTTTCA
AGCAGCTGGATATGATTTGGCTTGCCTCCCAAATAAGGTCTGGGTTTCCC
ACCTGCACATAGTTTCTTCCAAGTGTGACAATAGTGTAAACTTTTCCCAG
GTTCTATTTATCTCTACTCCATCTACTTGTTACCCTTCTTCTCCTTTCTC
ATTTCTTATTCATTCTTCGCGCTTCTTTTTTTTTCGTTTTCTCTCTTTCC
TAGTTTCTCCGTCGTTTTTTATCTTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_l10.g1 MSMg01no364_l10.g1 CHROMAT_FILE:
MSMg01no364_l10.g1 PHD_FILE: MSMg01no364_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:56 2005
         (431 letters)



>mm_chr1_172694345_172695175
          Length = 831

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgagttaacctaacatttcctccagggggagaattttgttctgtgaagttgagaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatgagttaacctaacatttcctccagggggagaattttgttctgtgaagttgagaaaag 329

                                                                       
Query: 61  ttgattttcttttttttagaatacactgtaattttttcccaactaaagattatgtaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgattttcttttttttagaatacactgtaattttttcccaactaaagattatgtaaaga 269

                                                                       
Query: 121 accaatatggtttctaaatttatatgttaagataactttattttgtccataaaaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 accaatatggtttctaaatttatatgttaagataactttattttgtccataaaaaatgtt 209

                                                                       
Query: 181 ccttactagggctagggaggtggctcaatggttaagagtacttcttattcttccagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccttactagggctagggaggtggctcaatggttaagagtacttcttattcttccagaaga 149

                                                                       
Query: 241 cctgagttctcttacctacactgaaggaacagcagctcacaactgcctgtacttcagctc 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cctgagttctcttaccaacactgaaggaacagcagctcacaactgcctgtacttcagctc 89

                                                                       
Query: 301 cagggatccaacatgtccttctggcacctgagggtataccccgcacatgtggcatgcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  cagggatccaacatgtccttctggcacctgagggtataccccgcacatgtggcatgcatt 29

                                       
Query: 361 cacacatacacttgtagttagaattctg 388
           ||||||||||||||||||||||||||||
Sbjct: 28  cacacatacacttgtagttagaattctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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