BAC Information

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BAC

Clone NameMSMg01-365B13
Chromosome1 (Build37)
Map Location 67,578,382 - 67,752,927
singlet/doubletdoublet
Overlap geneKif22-ps
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365B13.T7 (MSMg01no365_b13.b1)MSMg01-365B13.TJ (MSMg01no365_b13.g1)
ACCAG473135AG473136
length738762
length of high quality
(start - end)		575 (43 - 617)349 (56 - 404)
definitionCHROMAT_FILE: MSMg01no365_b13.b1 PHD_FILE: MSMg01no365_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:30 2005CHROMAT_FILE: MSMg01no365_b13.g1 PHD_FILE: MSMg01no365_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,578,382 - 67,578,952)(67,752,579 - 67,752,927)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATTTACTGGTTACTAAGAAACCGTGGATGATCTTTGTAGGTTTTCC
TTAATTGATTGATCTCAGGCTTGATACTTTTGATTGCAATGCCGATTGCA
TAGTTGCTATAAAGTTCTGATTTTTTTTTAATCTTAAATGCCTATATCCA
TGATAAAGATTTCTAAACTTTTCACAACAAAAGATTATTAGGATACCATT
GTTATCTTTTATGACATTGGCTCTCTACTTCTGTCTCTTTCTTATTAAAA
TTCAATCTTTAAACTTGGACTCTGGGACTTTTATCTTTTACAGGTTAAAA
AATATATCCACCTAGATAAGAAGATGACATCACTGCTACCTCTGTTCTAA
AAAGCATTGGGTTACAGTGAGATACAGTGTGAATCTAGGATTTCGGGTCT
GTTCCGGTTAGTTTTCTTGTGGTTCACACATTAAAGTATATAAAGTTAGT
GGTGAAAAAAGACAAGGAATTGAGTTTCTTAAAGGGGGTACATACTTAAA
TATTGCCTTTATTTTAAGAATTTATAGTATTAAATTCTCCATGATAGCTT
TTATAATAATCCTTTGCGGCCTTGTGACACATTTTCACTTACCATTTTAC
ATTCATCCTTTTTTTCTTCACAAAGAACTTATTTTCTCTGTGAACCTTTC
TCGTATACCCACTACCATGTTGTTGCCCTTTATTTGAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGATATTTCACCCTAGTGTTTAAGATGACAATTACACTGTGAA
GCTTCATATGCAAATTTTCTTCTCTTCCCTCCAGATTCTCCTACTCCTCT
TGTCTGCCATATTTTTAATCTCCAGACCTTCATATATACACACACAGACC
ACACAGGTGTACATGAGCATATGCTTGCACAGTTGTGTGTATGTAGTAGC
CTAACATAGAGCTATTTCCATGTGTTGAACTTATTTAATTATCAATGTAA
CATCTATGGAAATCCTTCTAAGAAACAGATCATTTCCTTAAGGAGGATAA
GTCTTTGGCTTATAACAATTATTAAAATACAAATTTGCATTTCTCTTTTC
TGTTTCCGTCAAACCCTTAATATCATTCTCATGNCACTATTGATCACAGC
GGCAGTGCATTTTTGTGTTTCTTTTCTGATAGAGAACTAATCATTTGGCA
GCTATGAGTGAGTTTATTTGGGTTTTCAATTTTTGATGGATCACCCCGTT
TCAGTGTTACTCTAGGCCTTCCAATGAAGGTTGAAAAAGAAGGATGGGTA
TGGCCCTAACGGACATGGAAAAATGCCTTTTTAAAAAAGAGTTTAATCCT
AAAGGGCCCCCCCCCTTTTTGGTTTTCAAAAAAAGGGGCCCAAATTATTC
TTTTTTTCCCACAAAGATTTTGGGGATTATTTTGGAAAAAACCCTTTTAA
AAAAAAATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_b13.b1 MSMg01no365_b13.b1 CHROMAT_FILE:
MSMg01no365_b13.b1 PHD_FILE: MSMg01no365_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:30 2005
         (575 letters)



>mm_chr1_67578178_67579152
          Length = 975

 Score = 1081 bits (559), Expect = 0.0
 Identities = 568/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatttactggttactaagaaaccgtggatgatctttgtaggttttccttaatt 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaattgaatggttactaagaaaccgtggatgatctttgtaggttttccttaatt 264

                                                                       
Query: 65  gattgatctcaggcttgatacttttgattgcaatgccgattgcatagttgctataaagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattgatctcaggcttgatacttttgattgcaatgccgattgcatagttgctataaagtt 324

                                                                       
Query: 125 ctgatttttttttaatcttaaatgcctatatccatgataaagatttctaaacttttcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgatttttttttaatcttaaatgcctatatccatgataaagatttctaaacttttcaca 384

                                                                       
Query: 185 acaaaagattattaggataccattgttatcttttatgacattggctctctacttctgtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaaagattattaggataccattgttatcttttatgacattggctctctacttctgtct 444

                                                                       
Query: 245 ctttcttattaaaattcaatctttaaacttggactctgggacttttatcttttacaggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttcttattaaaattcaatctttaaacttggactctgggacttttatcttttacaggtt 504

                                                                       
Query: 305 aaaaaatatatccacctagataagaagatgacatcactgctacctctgttctaaaaagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaatatatccacctagataagaagatgacatcactgctacctctgttctaaaaagca 564

                                                                       
Query: 365 ttgggttacagtgagatacagtgtgaatctaggatttcgggtctgttccggttagttttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgggttacagtgagatacagtgtgaatctaggatttcgggtctgttccggttagttttc 624

                                                                       
Query: 425 ttgtggttcacacattaaagtatataaagttagtggtgaaaaaagacaaggaattgagtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtggttcacacattaaagtatataaagttagtggtgaaaaaagacaaggaattgagtt 684

                                                                       
Query: 485 tcttaaagggggtacatacttaaatattgcctttattttaagaatttatagtattaaatt 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 tcttaaagggggtacatacttaaatattgcctttattttaagattttatagtattaaatt 744

                                          
Query: 545 ctccatgatagcttttataataatcctttgc 575
           |||||||||||||||||||||||||||||||
Sbjct: 745 ctccatgatagcttttataataatcctttgc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_b13.g1 MSMg01no365_b13.g1 CHROMAT_FILE:
MSMg01no365_b13.g1 PHD_FILE: MSMg01no365_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:30 2005
         (349 letters)



>mm_chr1_67752379_67753127
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatatttcaccctagtgtttaagatgacaattacactgtgaagcttcatatgcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttgatatttcaccctagtgtttaagatgacaattacactgtgaagcttcatatgcaaat 490

                                                                       
Query: 61  tttcttctcttccctccagattctcctactcctcttgtctgccatatttttaatctccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttcttctcttccctccagattctcctactcctcttgtctgccatatttttaatctccag 430

                                                                       
Query: 121 accttcatatatacacacacagaccacacaggtgtacatgagcatatgcttgcacagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 accttcatatatacacacacagaccacacaggtgtacatgagcatatgcttgcacagttg 370

                                                                       
Query: 181 tgtgtatgtagtagcctaacatagagctatttccatgtgttgaacttatttaattatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgtatgtagtagcctaacatagagctatttccatgtgttgaacttatttaattatcaa 310

                                                                       
Query: 241 tgtaacatctatggaaatccttctaagaaacagatcatttccttaaggaggataagtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgtaacatctatggaaatccttctaagaaacagatcatttccttaaggaggataagtctt 250

                                                            
Query: 301 tggcttataacaattattaaaatacaaatttgcatttctcttttctgtt 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tggcttataacaattattaaaatacaaatttgcatttctcttttctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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