Query= MSMg01no365_d01.b1 MSMg01no365_d01.b1 CHROMAT_FILE:
MSMg01no365_d01.b1 PHD_FILE: MSMg01no365_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:37 2005
(533 letters)
>mm_chr1_178704186_178705118
Length = 933
Score = 1015 bits (525), Expect = 0.0
Identities = 531/533 (99%)
Strand = Plus / Minus
Query: 1 cacaaatagcagagagcactattcatgagattccaacaaaagacacaccaagttcccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cacaaatagcagagagcactattcatgagattccaacaaaagacacaccaagttcccata 674
Query: 61 cagcaggtgcagggcatgcttcatttaccattgaatttgatgacagtacgccaggaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cagcaggtgcagggcatgcttcatttaccattgaatttgatgacagtacgccaggaaaag 614
Query: 121 taactattagagaccatgtgacaaaattcacttctgaccagcgccacaagtcaaagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taactattagagaccatgtgacaaaattcacttctgaccagcgccacaagtcaaagaagg 554
Query: 181 cctctccaggaactcaagacttgccaggaattcagacaggaatgatggcaccagaaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cctctccaggaactcaagacttgccaggaattcagacaggaatgatggcaccagaaaata 494
Query: 241 aagtagctgactggctagcccaaaacaaccctcctcagatggtgtgggaaagaacagagg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 493 aagtagctgactggctagcccaaaacaaccctcctcaaatggtgtgggaaagaacagagg 434
Query: 301 aggattccaagagcattaaaagtgatgttcctgtgtacttgaaaaggttgaaaggtaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aggattccaagagcattaaaagtgatgttcctgtgtacttgaaaaggttgaaaggtaaag 374
Query: 361 tgatcttcagagattcctattgtatcataagttaccagacagactactgttacttaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgatcttcagagattcctattgtatcataagttaccagacagactactgttacttaatta 314
Query: 421 tacactggaaaatatctttttcaaaatttacgtttaattttaaagctcaagagcaaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tacactggaaaatatctttttcaaaatttacgtttaattttaaagctcaagagcaaacag 254
Query: 481 cactgtttatgtccagatttctcattcatattagcttttctttgttttcttgc 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cactgtttatgtccagatttctcattcatattagcttttctttgttttcttgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_d01.g1 MSMg01no365_d01.g1 CHROMAT_FILE:
MSMg01no365_d01.g1 PHD_FILE: MSMg01no365_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:37 2005
(593 letters)
>mm_chr1_178558264_178559257
Length = 994
Score = 1056 bits (546), Expect = 0.0
Identities = 575/594 (96%), Gaps = 16/594 (2%)
Strand = Plus / Plus
Query: 1 taacaactgactctaatggagtaatacaagctactctattaaatacacagctaactcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacaactgactctaatggagtaatacaagctactctattaaatacacagctaactcctt 260
Query: 61 cttcagtgctcatagctataatccagatttagaggaagtagggaaggaaacagcattagg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagtgctcataactataatccagatttagaggaagtagggaaggaaacagcattagg 320
Query: 121 atgtaaagaaaatcagaaatgtgttctgtgcagaagaaaagcaacacttcaaagagctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaaagaaaatcagaaatgtgttctgtgcagaagaaaagcaacacttcaaagagctgg 380
Query: 181 gacttaaagatgg-agaggcaaagggtttatattaaacaatatgattacatttgggtttg 239
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttaaagatggaagaggcaaaggatttatattaaacaatatgattacatttgggtttg 440
Query: 240 gatacattcatcctgagttctgaacttggttcagtagacaaaaggattagagaactgtgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatacattcatcctgagttctgaacttggttcagtagacaaaaggattagagaactgtgt 500
Query: 300 gcttgcttatttattgatcattgccaagtcataagcacaatatgggtataataacttctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgcttatttattgatcattgccaagtcataagcacaatatgggtataataacttctt 560
Query: 360 atgaagacaaaacatgaaataacaatgaccaccatttctctgaatttagaaaatgttggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaagacaaaacatgaaataacaatgaccaccatttctctgaatttagaaaatgttggc 620
Query: 420 ttggtttgggaagagaaaaagatactgtaacaatgccaaatactctttaatttgctatta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggtttgggaagagaaaaagatactgtaacaatgccaaatactctttaatttgctatta 680
Query: 480 aactttcaacattttcatgttgaaacattgttatgaggactgaagcaactaaagactact 539
|||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 681 aactttcaacattttcatgttgaaacattgctatgaggactga---------------ct 725
Query: 540 gtcttccccaaattttcccaccagggtatcaggggctagaagaaagcagtgcat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gtcttccccaaattttcccaccagggtatcaggggctagaagaaagcagtgcat 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
