BAC Information

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BAC

Clone NameMSMg01-365D08
Chromosome1 (Build37)
Map Location 41,048,973 - 41,049,326
singlet/doubletsinglet
Overlap genenone
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D08.T7 (MSMg01no365_d08.b1)MSMg01-365D08.TJ (MSMg01no365_d08.g1)
ACCAG473220AG473221
length775733
length of high quality
(start - end)
357 (45 - 401)342 (57 - 398)
definitionCHROMAT_FILE: MSMg01no365_d08.b1 PHD_FILE: MSMg01no365_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:39 2005CHROMAT_FILE: MSMg01no365_d08.g1 PHD_FILE: MSMg01no365_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCTCCTTTTCCGTTGCTCCATTCTCTACCATCACTATTTTGTTCATCTC
CTTTTTGGAAGCAGGGTTTCTTCTTGGTTCTCCTGAGATGAGCATGATCT
CTGCCTCACATTGGTTACTATCCCCGTGTTGCTTGTTGCTCTTTCCATGC
ATTGCTCAATCCTCAACTTTCATGTACCCCAATATAGCAGCTTCACAAAT
GCATTCTTATATTTGGGGGTGGCTTTTTGTTGTTGCTGGTGGTGTGACTT
GGTTCTTGAGCAGGAACTCTTATATGGCCACATTATTTTTGAATATCCAA
ATATTGATTATGGCTTCCCTCCAAGACAGCTTCCCCAGAGAGAGTCTCAC
CCAAGAGGGAAATCAAATTATGGATACCATCACAACCCTCTTCCTCATTC
ATTGCAAATTAAATCTGAAATATGTATTTATAACTATCCATCTTGTGGCG
CTTTCTCCTCCCTGTATTCAGGTATATATACACGTCTCATTTTGGAATTA
AGTCCCACCTGTAACTATTTTAAATCCTGTATAAACTTTCTTGTGCTTCT
CTTTTCCTCCCTATTCCTCAACTTTTTTGTTTATTCCCTTTCTTTACATT
TTCACTTCTTCTTTTCTTCTTCCTCTTTTTTACGCTCCCTCCTTTTCCTC
TCCCCTTCTCTTCCTTTTTCCACATTTCCGACTTTTCGCTCACTAATTCT
ATCTCTTTCCCTCCCTTTTTTTACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTGTTTATATCTGTATCCCAGTTTTAAATTGGGTTATTTGGTT
TGTTGATGTCTAATTTCTTGAGTTCTTTATATGTTTTGGATATCAGCCCT
CTGTTGGATGTAGGGTTGGTGAAGATCTTTTCCCAGTCTGTAGGCTGTGG
TTTTGGTCTTTGGACAGTGCCATCTGCAAAGATTTTTATTTTAAAAATAT
TTAAAAGTTACAACCTCCCCCCAGGTGCTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATGTGT
TTAGTGTGGCTAACTTGCTTTTTGAGGCCCTTTTTGATGGGGTGCCATAC
CACATAAGTGATGGCACTCTGGGAACAGGGAGTCGAAGCCCCACAGAAGG
ATTTCTGAGAGGATTCTTTGAAACTTCTCGAATCAGAGTCATCCTAGAAT
CATGTACAGGTGTGGAGATGATATTCCGTGAGTGTACCATAATTTTGCAC
TCCCATCTTTCACAGAATCACTATTGTGTGTCCTTGTTGGCGACCGTCTG
GTCCTTGTTTTGGTCTTTTTCCCTGTTTCTCCCACTCTTTGGAGTCTAGC
ATTTATTTTTTGCGATTTTTGTCTTTTTAAACTTGGGCCTCCTGTTTTAT
TATATTTTTTTTCCCTCTCCGCCTCTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d08.b1 MSMg01no365_d08.b1 CHROMAT_FILE:
MSMg01no365_d08.b1 PHD_FILE: MSMg01no365_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:39 2005
         (357 letters)



>mm_chr1_41048770_41049526
          Length = 757

 Score =  625 bits (323), Expect = 0.0
 Identities = 347/355 (97%), Gaps = 2/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctccttttcc-gttgctccattctctaccatcactattttgttcatctccttttt 62
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 557 gaattctcc-tttccggttgctccattctctaccatcactattttgttcatcttcttttt 499

                                                                       
Query: 63  ggaagcagggtttcttcttggttctcctgagatgagcatgatctctgcctcacattggtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaagcagggtttcttcttggttctcctgagatgagcatgatctctgcctcacattggtt 439

                                                                       
Query: 123 actatccccgtgttgcttgttgctctttccatgcattgctcaatcctcaactttcatgta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actatccccgtgttgcttgttgctctttccatgcattgctcaatcctcaactttcatgta 379

                                                                       
Query: 183 ccccaatatagcagcttcacaaatgcattcttatatttgggggtggctttttgttgttgc 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 378 ccccaatatagcagcttcacaaatgcattcttatatttgggggtggctttttgttggtgg 319

                                                                       
Query: 243 tggtggtgtgacttggttcttgagcaggaactcttatatggccacattatttttgaatat 302
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 318 tggtggtgtgacttggttcttgagcaggaactcacatatggccacattatttttgaatat 259

                                                                  
Query: 303 ccaaatattgattatggcttccctccaagacagcttccccagagagagtctcacc 357
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccaaatattgagtatggcttccctccaagacagcttccccagagagagtctcacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)