Query= MSMg01no365_d21.b1 MSMg01no365_d21.b1 CHROMAT_FILE:
MSMg01no365_d21.b1 PHD_FILE: MSMg01no365_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:41 2005
(450 letters)
>mm_chr1_63267121_63267970
Length = 850
Score = 439 bits (227), Expect = e-127
Identities = 250/259 (96%), Gaps = 4/259 (1%)
Strand = Plus / Minus
Query: 5 gaattctccattctctccctaaacacagggcgtaaagtttcctttggcaaagctaactca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 gaattctccattctctccctaaacacagggcgtaaagtttcctttggcaaagctagctca 246
Query: 65 tgcttccttttgtcaaggcctctcccctctttctctccaggatatatagatacagataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgcttccttttgtcaaggcctctcccctctttctctccaggatatatagatacagataca 186
Query: 125 gatagatacagatacagatacagatacagatacagatacagatacagatacagatacaga 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 185 gatagatacagatacagatacagttacagatacagatacagatacagatacagatacaga 126
Query: 185 tacagatacagttacagatacagatacagatacagatacagatacagatacagatacaga 244
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 t--agatacagatacagatacagatacagatacagatacagatacagatacagatacaga 68
Query: 245 tacagttacagatatagat 263
| || |||||||| ||||
Sbjct: 67 t--agatacagatacagat 51
Score = 143 bits (74), Expect = 2e-38
Identities = 80/82 (97%)
Strand = Plus / Minus
Query: 112 agatacagatacagatagatacagatacagatacagatacagatacagatacagatacag 171
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 82 agatacagatacagatagatacagatacagatacagttacagatacagatacagatacag 23
Query: 172 atacagatacagatacagatac 193
|||||||||||| |||||||||
Sbjct: 22 atacagatacagttacagatac 1
Score = 105 bits (54), Expect = 8e-27
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Minus
Query: 110 atagatacagatacagatagatacagatacagatacagatacagatacagatacagatac 169
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 68 atagatacagatac----agatacagttacagatacagatacagatacagatacagatac 13
Query: 170 agatacagatac 181
|| |||||||||
Sbjct: 12 agttacagatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 167
Number of extensions: 52
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 4
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_d21.g1 MSMg01no365_d21.g1 CHROMAT_FILE:
MSMg01no365_d21.g1 PHD_FILE: MSMg01no365_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:41 2005
(485 letters)
>mm_chr1_63098285_63099169
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 484/491 (98%), Gaps = 6/491 (1%)
Strand = Plus / Plus
Query: 1 cttagtgaggaggggggtaaaacattcctgaatgagacactaagaacatctagatttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagtgaggaggggggtaaaacattcctgaatgagacactaagaacatctagatttatt 260
Query: 61 aatttctctattttacctctcaacttacagaataaactgtaaattaaagaataaatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttctctattttacctctcaacttacagaataaactgtaaattaaagaataaatccat 320
Query: 121 aggaaacaaaagaggtcttaagaaacgtaagtttacaaattccagccacagtagtggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaacaaaagaggtcttaagaaacgtaagtttacaaattccagccacagtagtggggt 380
Query: 181 tttacttgatctatttgcttctatttaccctgtaactacgtgtctagccatcttaagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttacttgatctatttgcttctatttaccctgtaactacgtgtctagccatcttaagtgt 440
Query: 241 aaaccacagatcatgtgctaaagaacatgatcctcaacagctctatgaacaataataaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaccacagatcatgtgctaaagaacatgatcctcaacagctctatgaacaataataaac 500
Query: 301 ggtctaagggtgttctacattttgaggccccaggttattcttttctttatatatctgcaa 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ggtctaagggtgttctacattttgaggccccaggttatccttttctttatatatctgcaa 560
Query: 361 ggtagcaaaggacagctatacaccttgacacggcagagatccagtgtaaaaaggtgcgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtagcaaaggacagctatacaccttgacacggcagagatccagtgtaaaaaggtgcgtc 620
Query: 421 actagtttgttttgtcaaaaaataaaaataaaaataaaaa------gaagctcatatata 474
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 actagtttgttttgtcaaaaaataaaaataaaaataaaaataaaaagaagctcatatata 680
Query: 475 attttaagcta 485
|||||||||||
Sbjct: 681 attttaagcta 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
