BAC Information

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BAC

Clone NameMSMg01-365F14
Chromosome1 (Build37)
Map Location 23,867,277 - 23,867,664
singlet/doubletsinglet
Overlap geneSmap1
Upstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365F14.T7 (MSMg01no365_f14.b1)MSMg01-365F14.TJ (MSMg01no365_f14.g1)
ACCAG473325AG473326
length788765
length of high quality
(start - end)		388 (64 - 451)477 (58 - 534)
definitionCHROMAT_FILE: MSMg01no365_f14.b1 PHD_FILE: MSMg01no365_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:49 2005CHROMAT_FILE: MSMg01no365_f14.g1 PHD_FILE: MSMg01no365_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCACAGACATGTCCACACTGGCCTCCAGCAACGTGTCAGTTACAGTTCAA
CATTTCCCTCTGGAGAGTGGGTTTCTTTTCTCATACATTGAGTTTTGCGT
GTCTGCCTGCCTCTTCTGGTTTGGGAGCTATCTAGATTGCCTTATGATCT
CATTTCACTGATGAATCCAAAAGAGATGATGAGTTTTTATTCTCCCTCTT
TCTGCTTGTTAAATTCAGCAGCTTACAGATTAGGTGTGTGCTGTTGTTTG
TATTAACTTACATTTTTCAAAAGAACATTGCTACCTCAGTTTTGAAGATC
AGCTATTATACCTGTTACTTAAAGGAACAGGAAATGTCAAAAATATGGCA
ACTGGAAACTAAGCTTTTATTCAGTTTTACGCTGTAAATCACAGAAAGAT
TGGACAGTCCAGCTTCTGCTAATGAAACTAATCTGAATGGGATATGTGCT
GATTACATTGGACATCTGTTTACCCTGATTCCACTTGGTTTATCCCTCTT
TTTTAATACTTGTTTTTCAACCTTCCTTTCTTCTCGGAATATCTTTAATA
TACCTCTTATTTTGTGCTTTATTCCCCCCTCTAACGTAACCTCTTTGGCT
TTTCCACTATATTATCACTTCCCCTTCTATTTCTCCTAAGCTTTTTTTTC
CCTCTTCCCTTTTTCCTCTACCCTTCCCCTCCTTATACCAGTTTTCCCTC
TTTACCTCCGATATTCTTTCCTTCTCCCCATTTTAACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAT
GTTCAGCATCCTTAATGATCAGGAAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCTGTTCCTC
ATATAATTGGACATTGTACTACCGGAGGGTCCAGCAATACCTCTCCTGGG
CATATATCCACAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGAAATGGATATAGAAAATATGGTACATTTACACAAT
AGAGTACGATTCAGCTATTAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGATAGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCAAAAA
AGACCTTACATGTTAGGTACCCCCTAAAAAGGGATATTATTCCCCAAATT
TAAAAACCCCCAAACAAAATGGAGTTTTGTAAACATTTTAAACTCTCAAA
AAAAGAAAAACCACGGGGGGAACCTTTCGCCCTCTTTAAAATGGGAAAAA
AACACCCCTGGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_f14.b1 MSMg01no365_f14.b1 CHROMAT_FILE:
MSMg01no365_f14.b1 PHD_FILE: MSMg01no365_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:49 2005
         (388 letters)



>mm_chr1_23867033_23867820
          Length = 788

 Score =  698 bits (361), Expect = 0.0
 Identities = 381/393 (96%), Gaps = 10/393 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacactggcctccagcaacgtgtcagttacagttcaacatttccctctggagagtgggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cacactggcctccagcaacgtgtcagttacagttcaacatttccctctggagagtgggtt 573

                                                                       
Query: 61  tcttttctcatacattgagttttgcgtgtctgcctgcctcttctggtttgggagctatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcttttctcatacattgagttttgcgtgtctgcctgcctcttctggtttgggagctatct 513

                                                                       
Query: 121 agattgccttatgatctcatttcactgatgaatccaaaagagatgatgagtttttattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agattgccttatgatctcatttcactgatgaatccaaaagagatgatgagtttttattct 453

                                                                       
Query: 181 ccctctttctgcttgttaaattcagcagcttacagattaggtgtgtgctgttgtttgtat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 ccctctttctgcttgttaaattcagcagcttacagattaggtgtgtgctgttgtttgtgt 393

                                                                       
Query: 241 taacttacattttt-----caaaagaacattgctacctcagttttgaagatcagctatta 295
           |||||||||          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taacttaca-----gccagcaaaagaacattgctacctcagttttgaagatcagctatta 338

                                                                       
Query: 296 tacctgttacttaaaggaacaggaaatgtcaaaaatatggcaactggaaactaagctttt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tacctgttacttaaaggaacaggaaatgtcaaaaatatggcaactggaaactaagctttt 278

                                            
Query: 356 attcagttttacgctgtaaatcacagaaagatt 388
           ||||||||||| |||||||||||||||||||||
Sbjct: 277 attcagttttaggctgtaaatcacagaaagatt 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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