BAC Information

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BAC

Clone NameMSMg01-365G01
Chromosome1 (Build37)
Map Location 128,897,280 - 129,081,834
singlet/doubletdoublet
Overlap geneLOC383559
Upstream geneE030049G20Rik
Downstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365G01.T7 (MSMg01no365_g01.b1)MSMg01-365G01.TJ (MSMg01no365_g01.g1)
ACCAG473347AG473348
length736725
length of high quality
(start - end)		431 (64 - 494)588 (50 - 637)
definitionCHROMAT_FILE: MSMg01no365_g01.b1 PHD_FILE: MSMg01no365_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:51 2005CHROMAT_FILE: MSMg01no365_g01.g1 PHD_FILE: MSMg01no365_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,897,280 - 128,897,696)(129,081,247 - 129,081,834)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTATTTTCCTGTTTGGGTTTCGCAAGCAGTACTATTATAGGTGTGCA
CTACCATGCCTAGCTATCAAGTGTTTTGAAGCAAGCAAAACAAAGGGGTA
TACAGTTCATAGGCAAAACCAGGCATGTGATGAAGTAATCCTACTTATGC
GAAAAGTATCCTGGTATAGATTTGTTCTGGATGCTCACAGAAATGAATGG
TCCCAATCAGGAGGTAGAAAAAACTTTTCAATACAAAAATGGCAAGAACC
TCCTTGACATAAGACAGTGATAGCCCTCCTCCCCATGGTCAGCACAGCTG
CTATTTGATCAGCATAGCTGAGCCAACTGATGCATCAGAAAGGAGCTGTG
TGGGTTTTCCCCTGGAGACAACAGCCAGGTTTCCATGAGAATCTGCAAGG
TAACATGTTCAAGAGATGAAGAGGGAGGGGCCGAGGGAGGGGTCGCAGAG
GTTAATAGCATTTGCTGCTCTTACAGAAGTCCTGAATTTGTTTCTTACCG
CCCACACTGGACAGTTCACTTTTGTCTATCTCTCCAGTTTCAGAGTACCC
GACTCCCTATCCGGGCTCCAATTTTCTTGTGCCTCTATTTCTTCTCTCGA
CCGCCGCTTTCGTGTATCCCATAGTCTCCTAATTCCCCTTTTTTTTTCCT
TTTATTCCCCAACAATTTTCCCGCATCTTTTTCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
AGGCCAACCTGATCTACAGAGTGAGTTCCAGGATATCCAGGGTTACACAG
AGAAACCCTGTCTCAAAACAAACAAACAAACCAACCTGAGATGGTTAGCA
TCCTCAGTAATGACCTCTGGTATCCACACAGACAGGTGAACATTAACATA
GACATACACACACAGACGTGAATGTGCGAGTGCACTTTTACCATCTAGTC
TCTTCTTTACAGAGGATAAAGCTCACTCAGATCAGAAGAGTAGGGACAAG
GTTTGTTTAGACTTGGGACACAGTGCTTCATGTATCCAACGTTCCATATT
CTCTGACAAAGCTCTAACTTTCCATCTTCCCAAAGGTTATTCGAACCAAC
TCTATAAGGTATGATGTGTGTATATAACTCATTTTAGAGCGCTGTCTCAG
TTACCAAAGTGCTTGCTTTAAAAGATCAAGGGCTTGACACTGATTCCCCA
GCATTCCAGGGCTGTGGAAATGGAGACAAGTGGATCCACAGGCTCACTGG
TTAGCCATAGGTTAGCTGAATTGGAGTGTTTCAGGCCATCAAAAGACACT
GTCTCAAAACAATAATAATAATAAAGAAGGTGAATCACCTCATGAGAAAC
ACACACACACACACACNCTCTTCTCTTTCTCTCTATAGAAAGATAAATAG
AGAGAGATTGTTAGAGAGAGCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_g01.b1 MSMg01no365_g01.b1 CHROMAT_FILE:
MSMg01no365_g01.b1 PHD_FILE: MSMg01no365_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:51 2005
         (431 letters)



>mm_chr1_128897080_128897910
          Length = 831

 Score =  729 bits (377), Expect = 0.0
 Identities = 407/417 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttgggtttcgcaagcagtactattataggtgtgcactaccatgcctagctatcaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttgggtttcgcaagcagtactattataggtgtgcactaccatgcctagctatcaagtg 260

                                                                       
Query: 61  ttttgaagcaagcaaaacaaaggggtatacagttcataggcaaaaccaggcatgtgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgaagcaagcaaaacaaaggggtatacagttcataggcaaaaccaggcatgtgatga 320

                                                                       
Query: 121 agtaatcctacttatgcgaaaagtatcctggtatagatttgttctggatgctcacagaaa 180
           |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
Sbjct: 321 agtaatcctacttatgcgaaaagtatcctgatacagatttgttctggatgctcatagaga 380

                                                                       
Query: 181 tgaatggtcccaatcaggaggtagaaaaaacttttcaatacaaaaatggcaagaacctcc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgaatggtcccaatcaggaggtagaaaaaacttttcaaaacaaaaatggcaagaacctcc 440

                                                                       
Query: 241 ttgacataagacagtgatagccctcctccccatggtcagcacagctgctatttgatcagc 300
           |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ttgacataagacagcgacagccctcctccccatggtcagcacagctgctatgtgatcagc 500

                                                                       
Query: 301 atagctgagccaactgatgcatcagaaaggagctgtgtgggttttcccctggagacaaca 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagctgagccaactgatacatcagaaaggagctgtgtgggttttcccctggagacaaca 560

                                                                    
Query: 361 gccaggtttccatgagaatctgcaaggtaacatgttcaagagatgaagagggagggg 417
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gccaggtttccatgagaatctgcaaggcaacatgttcaagagatgaagagggagggg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_g01.g1 MSMg01no365_g01.g1 CHROMAT_FILE:
MSMg01no365_g01.g1 PHD_FILE: MSMg01no365_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:52 2005
         (588 letters)



>mm_chr1_129081047_129082034
          Length = 988

 Score = 1067 bits (552), Expect = 0.0
 Identities = 579/588 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccaacctgatctacagagtgagttccaggatatccagggttacacagagaaaccct 60
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 788 aaggccaccctgatctacagagtgagttccaggatatccagggctacacagagaaaccct 729

                                                                       
Query: 61  gtctcaaaacaaacaaacaaaccaacctgagatggttagcatcctcagtaatgacctctg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 728 gtctcaaaacaaacaaacaaaccaacccgagatggttagcatcctcagtaatgacctctg 669

                                                                       
Query: 121 gtatccacacagacaggtgaacattaacatagacatacacacacagacgtgaatgtgcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 668 gtatccacacagacaggtgaacattaacatagacatacacacacagacgcgaatgtgcga 609

                                                                       
Query: 181 gtgcacttttaccatctagtctcttctttacagaggataaagctcactcagatcagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 608 gtgcacttttaccatctagtctcttctttacagaggataaagctcactcaggtcagaaga 549

                                                                       
Query: 241 gtagggacaaggtttgtttagacttgggacacagtgcttcatgtatccaacgttccatat 300
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 548 gtagggacaaggtttgtttagacttgggacacagtgcttcatttatccagcgttccatat 489

                                                                       
Query: 301 tctctgacaaagctctaactttccatcttcccaaaggttattcgaaccaactctataagg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 488 tctctgacaaagctctaactttccatcttcccaaaggttattcgaatcaactctataagg 429

                                                                       
Query: 361 tatgatgtgtgtatataactcattttagagcgctgtctcagttaccaaagtgcttgcttt 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 428 tatgatgtgtgtatataactcattttagagagctgtctcagttaccaaagtgcttgcttt 369

                                                                       
Query: 421 aaaagatcaagggcttgacactgattccccagcattccagggctgtggaaatggagacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaagatcaagggcttgacactgattccccagcattccagggctgtggaaatggagacaa 309

                                                                       
Query: 481 gtggatccacaggctcactggttagccataggttagctgaattggagtgtttcaggccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtggatccacaggctcactggttagccataggttagctgaattggagtgtttcaggccat 249

                                                           
Query: 541 caaaagacactgtctcaaaacaataataataataaagaaggtgaatca 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caaaagacactgtctcaaaacaataataataataaagaaggtgaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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