BAC Information

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BAC

Clone NameMSMg01-365J02
Chromosome1 (Build37)
Map Location 5,895,383 - 5,895,540
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs20, Atp6v1h, EG636659, Oprk1
Downstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365J02.T7 (MSMg01no365_j02.b1)MSMg01-365J02.TJ (MSMg01no365_j02.g1)
ACCAG473492AG473493
length654739
length of high quality
(start - end)
161 (76 - 236)588 (57 - 644)
definitionCHROMAT_FILE: MSMg01no365_j02.b1 PHD_FILE: MSMg01no365_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:06 2005CHROMAT_FILE: MSMg01no365_j02.g1 PHD_FILE: MSMg01no365_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCACCCCCCTTTCTTGCCACCCNNCCTTNCNCNNCCTTATAATTGCGGC
GCTATAGACTCCTATTCGACAGGACCGCGGAATTCTTCTCAATACATGAC
AGGAGTATGTACTGGCCCCTGGTGCGGATGCAGGCTCATGTGTACATATG
GGACTGTTTGTTTTCCTCAAATTATGTATGCTTCAACCTTTGTATTCATA
TAGTAGTATAGTTATGTCTATGTTCCTGCCTCAGTAACTCTCATTTGNTT
TCATCTGTTGTTTGGCTTTGTTTGATTGGTTATTTTTAAGGTAATTTCAA
TTGAATACTATGGAACAAACTAATAAAAAAACTCCCTAAAAATGGGAAAA
GTTATTTCCCGTTTTTAATAATCGGGCGTCCTGGAATAATAAAATATCTT
TTTAAAGGCGCCTAATTTACACGGAGTTATCCCTAAAAATTTTTCCCCCC
CCCTACAATTTTAATTACCCTTCTCCCCGGAACCCCCAAGACCCCTCTTT
CCCTTCCCCTCCTTCTTTAAACAACTCCTTCGTCCCCCCTTTGTGTGCCT
TTCTAACCCTTCCCTTCTTTTTCTCTTCCTTTTTCTCGACCCCCTTTGTC
CCCTTTTTTCTTTTCCCCTTTCCTTTTCCCCCCCCTTCTACATCCACTAT
ATCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAAC
CTAGGATACCCCAGATATTAGATATAATTTGTTTAACCCATGAAACTCCG
AAAGAATGAAGACTGAAGTGGGGACCCTATGCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_j02.b1 MSMg01no365_j02.b1 CHROMAT_FILE:
MSMg01no365_j02.b1 PHD_FILE: MSMg01no365_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:06 2005
         (161 letters)



>mm_chr1_5895179_5895740
          Length = 562

 Score =  275 bits (142), Expect = 1e-78
 Identities = 154/158 (97%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctcaatacatgacaggagtatgtactggcccctggtgcggatgcaggctcat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattcttctcaatagatgacaggagtatgtactggcccctggtgcggatgcaggctcat 303

                                                                       
Query: 65  gtgtacatatgggactgtttgttttcctcaaattatgtatgcttcaa-cctttgtattca 123
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 302 gtgtacatatgggactgtttgctttcctcaaattatgtatgcttcaaacctttgtattca 243

                                                 
Query: 124 tatagtagtatagttatgtctatgttcctgcctcagta 161
           ||||||||||||||||||||||||||||| ||||||||
Sbjct: 242 tatagtagtatagttatgtctatgttccttcctcagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 562
Length adjustment: 8
Effective length of query: 153
Effective length of database: 554
Effective search space:    84762
Effective search space used:    84762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)