Query= MSMg01no365_l15.b1 MSMg01no365_l15.b1 CHROMAT_FILE:
MSMg01no365_l15.b1 PHD_FILE: MSMg01no365_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:18 2005
(397 letters)
>mm_chr1_73456910_73457706
Length = 797
Score = 723 bits (374), Expect = 0.0
Identities = 392/398 (98%), Gaps = 2/398 (0%)
Strand = Plus / Minus
Query: 1 cctttgcttgctttggctttaaaaaaaatgaaaagagtctccaatcccttccttcagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cctttgcttgctttggctttaaaaaaaatgaaaagagtctccaatcccttccttcagaca 538
Query: 61 tgcttgtgacccccctggatcattgcagggtacccaccaaagcactgggagtctttatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgcttgtgacccccctggatcattgcagggtacccaccaaagcactgggagtctttatga 478
Query: 121 gcatgagtagaatgactctttcaaatcctatttatgcatcacttagtgctaggagatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gcatgagtagaatgactctttcaaatcctatttatgcatcacttagtgctaggagatttg 418
Query: 181 agtgagagggaaaggaaatgaaagcagattaaaatttaaaaaaaaatgaaaatgagaacc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 417 agtgagagggaaaggaaatgaaagcagattaaaatt-aaaaaaaaatgaaaatgagaacc 359
Query: 241 aggtggctttcatatttcattcgtaaagcaaatgagtggagttcat-aggaagtggtgaa 299
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 358 aggtggctttcataaaacattcgtaaagcaaatgagtggagttcattaggaagtggtgaa 299
Query: 300 gaacccctcagacacactggatgtgaggatggatgtcccatcactgggaagttccctttg 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 298 gaacccctcagacacactggatgtgaggatggacgtcccatcactgggaagttccctttg 239
Query: 360 gcaggaagaacctgcctactgcctgtggtttcacagaa 397
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcaggaagaacctgcctactgcctgtggtttcacagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_l15.g1 MSMg01no365_l15.g1 CHROMAT_FILE:
MSMg01no365_l15.g1 PHD_FILE: MSMg01no365_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:18 2005
(596 letters)
>mm_chr1_73325864_73326860
Length = 997
Score = 1114 bits (576), Expect = 0.0
Identities = 591/596 (99%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 1 acacgagaaaga-taactttgaatggaacagtcagcccaccgtgactcacacacttataa 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacgagaaagaataactttgaatggaacagtcagcccaccgtgactcacacacttataa 260
Query: 60 gacgctgcaagatacaacttgcctctcattcaattctttcaacgtggcttgttggaagag 119
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gatgctgcaagatacaacttgcctctcattcaattctttcaacttggcttgttggaagag 320
Query: 120 tgaacaggattgttggaaaaccgtacttttttgtcatcatagacagttcttctcatctga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacaggattgttggaaaaccgtacttttttgtcatcatagacagttcttctcatctga 380
Query: 180 aatagcttgtgatttaccacagtgcagaatgacatcataggtttctcactgtttcggctt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aatagcttgtgatttaccacagtgcagaatgacatcataggtttctcactgttttggctt 440
Query: 240 ttctaagcatgagaattcgggaaaaaggtattcactttaattagacaagtcattgtacca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaagcatgagaattcgggaaaaaggtattcactttaattagacaagtcattgtacca 500
Query: 300 taacaattgctactagttacatgaagtaataaatagactaattagtttatttaccattct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacaattgctactagttacatgaagtaataaatagactaattagtttatttaccattct 560
Query: 360 atgatttgtacaatgtttctgactattgtggtacactataaatacatacgttattttatt 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 atgatttgtacaatgtttctgactattatggtacactataaatacatacgttattttatt 620
Query: 420 tatcaataattttcttcacttaacttctcaatttaaaatgagggaaataataggtcatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcaataattttcttcacttaacttctcaatttaaaatgagggaaataataggtcatat 680
Query: 480 ctcacagatttatcagctttaaaagatgtggcatatataaagttttatttatagggacag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcacagatttatcagctttaaaagatgtggcatatataaagttttatttatagggacag 740
Query: 540 tagtgatttgaatgagaaatgccccatagacttgcacatttggctcgtttgaattg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtgatttgaatgagaaatgccccatagacttgcacatttggctcgtttgaattg 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
