BAC Information

Click to search

BAC

Clone NameMSMg01-365P04
Chromosome1 (Build37)
Map Location 116,937,951 - 116,938,512
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365P04.T7 (MSMg01no365_p04.b1)MSMg01-365P04.TJ (MSMg01no365_p04.g1)
ACCAG473781AG473782
length7391,365
length of high quality
(start - end)
566 (41 - 606)---
definitionCHROMAT_FILE: MSMg01no365_p04.b1 PHD_FILE: MSMg01no365_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:36 2005CHROMAT_FILE: MSMg01no365_p04.g1 PHD_FILE: MSMg01no365_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGCCTATGCTCAGCTCAATGACTACCTAGGGCATTGGTGAAGGCCAGG
AAGCAAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTGCTTGGAGAC
ACCTATAATAAAATAATACTGAAAGGAAGTACACAGATCCATTCACTGAC
TAACGCAAGGGCAAGTTTGGAACATTCGTTTTATAGGATGCCATGGTTCC
AGGATACTAACTTTCCACGTAATTTTTGCCTTGGGACTGCATCCAAGTTT
TTAGGCCTGTCACTTGAGTCACTACTGGAGTGGGTGTGGCAGACTGTGAG
GAGTTGTTTGGGTGAAATTAGATATGAGAGAAATTTCTCCAAAATGATCA
ATGTTAAAAACAATGTTGACATCAGTCCAGTATTCTTAATTGATGAAGAC
TTTTGATTAATTCCTTTAAATTTTAGGTCCTTTTACTTTCAATTATTTAT
TTACATCCCAAGTTTTGTACGTCCTTCTGGTGCCCCCATCCCAATTATTC
ACCCCATCTTTCCCTCCCCTTATATTTTGAGAGGGTGTTTCCCTTCTCAT
ACCCTGGATACCCCTCCTTTCCTGCCTTATCATATCATCCCATCATTATG
CCCATCCTTCTTTACTGAGGCCCATTTATGACGTTTTTCTGCTACATATG
TTTCTGCCTTTCACCATCAGCCTGTATATGCTCTTTGCG
TCCTCTTTTCTNCCCCCCCCCTTTTCCCACTTTCTCTACCACCTCTATTC
ATTTAAAGTTTCCTAAATAGTGGAAGTGGGAGACGGGACGGTGCTACGCA
GATAAAAATCGGCACCCCATAACAAGAGACTCTGTGCAAGCTCTCAGCTG
NTGTATCCGTTTTTGTCGCGCTTGATCGGGTGCTGCTGCGGGGAGAGGGA
TACTCATTTATTAACTTGCGCTCCCCAGTCGACAAAATGAGGTGGGATAC
GGCGAACGTAGTGTCGCTGTGTTCTGCGGAAGCGCTCCTGGTACGCGCGT
CTATTCTACGCCCGTAAGCCGCGTGCCGCCGCCAACACACCAATATCCCC
TCGTCACTGTTATTAATATCAACCATTCCTCTTTACCACTAACTACCCCT
ACGTTCTCCAAATTCTCCCCCCCGCTCCCTCCGCACATACACATACCGTC
CTCCTGCTCTCTGTGTCCCTCATGCGTTGCGCCTGGGTTCCCCCTTATGC
GTTCTACTTTTTCGCGAACTCACGACTTCATTCCTACCACCACAAATCAT
TATACACATCTATTCTCCAGCCGCCACATCGATTCACCGCGGAACCAACA
CCAACACACTATAGCGCTGTGGTTATCAACTACGCAAGTAGTCACGAATG
TCTCAACCACACTTCTCGCAGTAGTCGACACGTCGCCACCACCACGCCGT
CATCAGACGCTATGCTCAAACAACGCTGCCTCTCTATCTATCCTCCGCCA
GCCCATATTTGTATGTTCAATACTTACTCACCGCATAGTCTGATATACAC
ATTTACTCCCCTATCCACCACACTCTCGATCACCATCTCCTCCGCATTTT
CGCCCGCCACTCACTGATCCGATTCTTCTTCCTATACATAGCGACCCGCG
CCACAGTGGATTGAGTGTCTCTGCCACACGTCTGTCTTCGCTATCACTCA
ACCTCACGCCATGTTGTTTCGCGCCTCGACACACTCAACTCTTACACCTC
TTCCTCCCGACTTAGACACACACATATATGACACACCTCATTTGTAATGA
CAGACCTACTCTCACGCCCGTCCACACCACAGTATCCATATCTACTAGAA
CGCAATTACTGTGTCTGTATCGCCATTTGCGATTATCACGCTGCGATGTA
TCTCTGTCGTCGCCGCGTTCTACACAATATAACTCATGACTACACACACG
CGCAGTTTCNCAGAGAGTGAATAACACACGTGAGGTATGCGCGTGACGTT
ATTATTCTCGCCTACCCTCCAGCTCGCACCCCTCATAAGCATAATGATCG
ATACAGCGTTACTTATATCTAGACNCCGATGATGCCNCGCACTCTCTACT
ACTCATCCTGTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_p04.b1 MSMg01no365_p04.b1 CHROMAT_FILE:
MSMg01no365_p04.b1 PHD_FILE: MSMg01no365_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:36 2005
         (566 letters)



>mm_chr1_116937570_116938535
          Length = 966

 Score = 1040 bits (538), Expect = 0.0
 Identities = 556/562 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagcctatgctcagctcaatgactacctagggcattggtgaaggccaggaagc 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 gaattccaagcccagggtcagctcaatgactacctagggcattggtgaaggccaggaagc 884

                                                                       
Query: 65  aaagttcaattttgcttaggtatttggcaagtcattgcttggagacacctataataaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 aaagttcaattttgcttaggtatttggcaagtcattgcttggagacacctataataaaat 824

                                                                       
Query: 125 aatactgaaaggaagtacacagatccattcactgactaacgcaagggcaagtttggaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 823 aatactgaaaggaagtacacagatccattcactgactaacgcaagggcaagtttggagca 764

                                                                       
Query: 185 ttcgttttataggatgccatggttccaggatactaactttccacgtaatttttgccttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttcgttttataggatgccatggttccaggatactaactttccacgtaatttttgccttgg 704

                                                                       
Query: 245 gactgcatccaagtttttaggcctgtcacttgagtcactactggagtgggtgtggcagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gactgcatccaagtttttaggcctgtcacttgagtcactactggagtgggtgtggcagac 644

                                                                       
Query: 305 tgtgaggagttgtttgggtgaaattagatatgagagaaatttctccaaaatgatcaatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgtgaggagttgtttgggtgaaattagatatgagagaaatttctccaaaatgatcaatgt 584

                                                                       
Query: 365 taaaaacaatgttgacatcagtccagtattcttaattgatgaagacttttgattaattcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 taaaaacaatgttgacatcagtccagtattcttaattgatgaagacttttgattaattcc 524

                                                                       
Query: 425 tttaaattttaggtccttttactttcaattatttatttacatcccaagttttgtacgtcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tttaaattttaggtccttttactttcaattatttatttacatcccaagttttgtacgtcc 464

                                                                       
Query: 485 ttctggtgcccccatcccaattattcaccccatctttccctccccttatattttgagagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttctggtgcccccatcccaattattcaccccatctttccctccccttatattttgagagg 404

                                 
Query: 545 gtgtttcccttctcataccctg 566
           |||||||||||| ||| |||||
Sbjct: 403 gtgtttcccttcccatcccctg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)