Query= MSMg01no366_d22.b1 MSMg01no366_d22.b1 CHROMAT_FILE:
MSMg01no366_d22.b1 PHD_FILE: MSMg01no366_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:02 2005
(485 letters)
>mm_chr1_143350013_143350897
Length = 885
Score = 868 bits (449), Expect = 0.0
Identities = 474/483 (98%), Gaps = 2/483 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgaacatagttctattgggcctggtgataggcagttaaaacacagcttctca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgaacatagttctattgggcctggtgataggcagttaaaacacagcttctca 264
Query: 65 tattcctacttttctcaatagtgtctgtttgtagtctatgctccttcattccccgctgtt 124
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tattcctactttcctcaatagtgtctgtttgtagtctatgctccttcattcccctctgtt 324
Query: 125 tgtcaggaccatatatgtataatcatatatagcaaagaggagggactatttatatctcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtcaggaccatatatgtataatcatatatagcaaagaggagggactatttatatctcaa 384
Query: 185 ttatcatatatatat--cacaaatatcagggactggtggagcatagaatataatagaata 242
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatcatatatatatatcacaaatatcagggactggtggagcatagaatataatagaata 444
Query: 243 tggaaagacactactgaggaaactaggactataaaaagcaatcgagtgttccaatggctt 302
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 445 tggaaagacactactgaggaaactaggactataaaaaccaattgagtgttccaatggctt 504
Query: 303 agataatttttccttattactgtttcaggttttacagcctttgccttaaagaaggatgga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agataatttttccttattactgtttcaggttttacagcctttgccttaaagaaggatgga 564
Query: 363 tacttaaattactgttttcctgcctccacccccatctgctcccatggcacacagcctcac 422
||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct: 565 tacttaaattactgttttcctgcctccactcccatctgcacccatggcgcacagcctcac 624
Query: 423 aagtgatgatttagtgggcccttccattacattgatacaattcgttactaaatctagcaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagtgatgatttagtgggcccttccattacattgatacaattcgttactaaatctagcaa 684
Query: 483 tta 485
|||
Sbjct: 685 tta 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_d22.g1 MSMg01no366_d22.g1 CHROMAT_FILE:
MSMg01no366_d22.g1 PHD_FILE: MSMg01no366_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:02 2005
(446 letters)
>mm_chr1_143522879_143523724
Length = 846
Score = 799 bits (413), Expect = 0.0
Identities = 440/453 (97%), Gaps = 7/453 (1%)
Strand = Plus / Minus
Query: 1 tttatctcagcaggaagtacaaactcatttccaaagaatttgtcagtagaacatgggttt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 462 tttatctcagcaggaagtacaaactcatttccaaagaatatgtcagtagaacatgggttt 403
Query: 61 tcgtttatacattaaatgccatgtcctgtcttcagcaggcattgattttctgagtatcca 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 402 tcgtttatacattaaatgccatgtcctgtctttagcaggcattgattttctgagtatcca 343
Query: 121 taagtaacttttcattatgttttgaagctctatctgtgatgtgatcagaaaaatagtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taagtaacttttcattatgttttgaagctctatctgtgatgtgatcagaaaaatagtctt 283
Query: 181 tataatttattttgaccattttccctgttaaaacaatcttactctatatatttcaggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tataatttattttgaccattttccctgttaaaacaatcttactctatatatttcaggcct 223
Query: 241 gtttttttttcttttttttttt-------gtaaatccatgtataaacatagtacatttcc 293
||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 222 tttttttttttttttttttttttttttttgtaaatccatgtataaacatagtacatttcc 163
Query: 294 agaagcatatagattttaatatgggaatgaatacatatctctcaaagcatcagaacaaaa 353
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 162 agaagcatatagattttaatatgggagtgaatacatatctctcaaagcatcagaacaaaa 103
Query: 354 gaagtgataaatgcagttttatctttcaaataagtagtaaggtggtgtttgggaagtatt 413
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gaagtgataaatgcaattttatctttcaaataagtagtaaggtggtgtttgggaagtatt 43
Query: 414 aaggcattttgccactatgtggactggacatgt 446
|||||||||||||||||||||||||||||||||
Sbjct: 42 aaggcattttgccactatgtggactggacatgt 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
