NTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAAATTCTTAGGCAAATGGATGGATCTGGAGGATATC
ATCCTGAGTGAGGTAATCCAATCACAAAAGAGCACACATGATATACACTC
ACTGATAAGTGGATATTAGCCCAGAAACTTAGAATATCCAAGATACAATT
TGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGATAATT
CACTCCTTGTTAGAATGGAGAACAAAGTACCCATGGAAGAAGTTACAGAG
ACAAAGTTCGGAGCTAAGACAGAAGGAAGGACCATCCAGAAACTGCCCCA
CCGGGGGATCCATCCCATATACAACCACCAAACCCAGACACTATTGCATA
TGCCAGCAAGATTTTGCTGACAGGACCCAGATATAGCGCTCTCTTGTGAG
GCTATGTCAGTGCCTGGCAAATACAGAAGTGAATGCTCATAGTCATCTAT
TTGATGGAACACAGGGCCCTCAATGAATAAAGGAGCTAGAGAAAGTACCC
AAGGAGCTAAAAGGGGTCTGCATCCCTATAGGAGGAACAACAATATGAAC
TAACCAGTACCCCCCAGAGCGGCGTCTCTAGTTTCATATGTAGCAGAGGA
TGGCCCAGTTGGGTATCAATGGCAGGAAAGGGCCCTGGNCCCGTGAAGAT
CCTAAGCCCCCGTACAGGCGAATTTCATAACCCAGGTTCCGGGAGTGGGT
G

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGGACATCTTATAATT
GGTTAGAACACCATAAATATATTGGAAAGGGCCAAGAAATATGGATCTGT
ATTAAGAGCGAGAGAGATAGAGGAGAGAGAGATTTGTATGTATGTGCATA
TGTATGTTCTTGCACATGCATCAGCACATATGTATTATAGCAAATATGTG
TGGGTCAGCAATATCAACCCTTGTCTTCCAGCTTATTTGAGAGTCAGGGC
CTCTTGCTTGCTACTGTACATGTGAGGCTAGTGGGCCCATGAATCTCCAA
GGAATCTCTTTTCTCTGTCTCTCATTTCAACATAGGGACACTAAGATTAT
AGATGCTGTTGTGTTTGGTTTTACATGGGTAGCTTCTGCGATTTTTAACT
CAGATATTCACATTGAAGGCAAGCACTTTACATATGGACCCATCTCCCCA
GCATTGGGAGTGTATATGAAGAAAATTCAAATGACTCTACAAAGAGAATT
TGATGACAAAGAAGTAAATATAGTGAGGTTAGTGAGGTTGCTACTCAAAG
GTGAGTAACACATTTATAAACTAGTAATAAATGAGGCCATTTAGAATAGT
ACGGCAACATGAAAAATACCTAAAGACCGATCTTACAAAGAAGGGTACAA
ACTGGCCTGAAACCAACTCCTTTTTTGGGATTACATAAGAATCTAGGTAA
G

Query= MSMg01no366_h03.g1 MSMg01no366_h03.g1 CHROMAT_FILE:
MSMg01no366_h03.g1 PHD_FILE: MSMg01no366_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:18 2005
         (515 letters)



>mm_chr1_6779196_6780108
          Length = 913

 Score =  737 bits (381), Expect = 0.0
 Identities = 391/395 (98%), Gaps = 2/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatggacatcttataattggttagaacaccataaatatattggaaagggccaagaaata 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 393 ctatggacatcttataattggttagaacaccataaatacattggaaagggccaagaaata 334

                                                                       
Query: 61  tggatctgtattaagagcgagagagatagaggagagagagatttgtatgtatgtgcatat 120
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tggatctgtattaaga--gagagagatagaggagagagagatttgtatgtatgtgcatat 276

                                                                       
Query: 121 gtatgttcttgcacatgcatcagcacatatgtattatagcaaatatgtgtgggtcagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtatgttcttgcacatgcatcagcacatatgtattatagcaaatatgtgtgggtcagcaa 216

                                                                       
Query: 181 tatcaacccttgtcttccagcttatttgagagtcagggcctcttgcttgctactgtacat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tatcaacccttgtcttcgagcttatttgagagtcagggcctcttgcttgctactgtacat 156

                                                                       
Query: 241 gtgaggctagtgggcccatgaatctccaaggaatctcttttctctgtctctcatttcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtgaggctagtgggcccatgaatctccaaggaatctcttttctctgtctctcatttcaac 96

                                                                       
Query: 301 atagggacactaagattatagatgctgttgtgtttggttttacatgggtagcttctgcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  atagggacactaagattatagatgctgttgtgtttggttttacatgggtagcttctgcga 36

                                              
Query: 361 tttttaactcagatattcacattgaaggcaagcac 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  tttttaactcagatattcacattgaaggcaagcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 913
Length adjustment: 10
Effective length of query: 505
Effective length of database: 903
Effective search space:   456015
Effective search space used:   456015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)