Query= MSMg01no366_j02.b1 MSMg01no366_j02.b1 CHROMAT_FILE:
MSMg01no366_j02.b1 PHD_FILE: MSMg01no366_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:27 2005
(627 letters)
>mm_chr1_162095640_162096666
Length = 1027
Score = 1168 bits (604), Expect = 0.0
Identities = 619/624 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagtaaagagccttcatcctttgtaaggctgcctgtttatcattatttaaatac 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtaaagagcctttatcctttgtaaggctgcctgtttatcattatttaaatac 263
Query: 64 tactggaaatcccctctaagttggttctagtgatagaaagaacttttataccaaagtata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactggaaatcccctctaagttggttctagtgatagaaagaacttttataccaaagtata 323
Query: 124 gcaatacctatcaaactttaagaatgtaaattaaaaagatgaaagacttcactaccattc 183
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 gcaatgcctatcaaactttaagaatgtaaattaaaaagatgagagacttcactaccattc 383
Query: 184 cctgaagatgactaacagcagtaacaatagaaaattccatcatcttcttatccactgcgt 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 cctgaagatgactaacagcagtaacaatagaaaagtccatcatcttcttatccactgcgt 443
Query: 244 ctcaggctcccaactctaatgttcatcccaaggccatgctgttcacacttttggaaaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcaggctcccaactctaatgttcatcccaaggccatgctgttcacacttttggaaaaga 503
Query: 304 caaccttaattctccctaatagacagtgtttgtcattttgttttgtacagctaggctaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaccttaattctccctaatagacagtgtttgtcattttgttttgtacagctaggctaca 563
Query: 364 ctatagcaactgttccattccacataagggcaaagccacggtaatgacatgattttcctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctatagcaactgttccattccacataagggcaaagccacggtaatgacatgattttcctg 623
Query: 424 tggaactgctgaggtcacccatatgaggccatctgtggtacaggagcagttccatgagtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaactgctgaggtcacccatatgaggccatctgtggtacaggagcagttccatgagtg 683
Query: 484 acagagagacaggagcccagtgggtacctctgcagactgacacaccaccacccttgtctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagagagacaggagcccagtgggtacctctgcagactgacacaccaccacccttgtctc 743
Query: 544 ctcccatctgcctctagctccattttgtcccatatccatccttgccttcagatatcaaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcccatctgcctctagctccattttgtcccatatccatccttgccttcagatatcaaaa 803
Query: 604 ctcttactgtataaatttgtagag 627
||||||||||| ||||||||||||
Sbjct: 804 ctcttactgtacaaatttgtagag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_j02.g1 MSMg01no366_j02.g1 CHROMAT_FILE:
MSMg01no366_j02.g1 PHD_FILE: MSMg01no366_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:27 2005
(524 letters)
>mm_chr1_162241313_162242240
Length = 928
Score = 965 bits (499), Expect = 0.0
Identities = 519/528 (98%), Gaps = 4/528 (0%)
Strand = Plus / Minus
Query: 1 aacactagagtaatggtttgctttccttatctctgtctaatttcaaagagaacgaaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aacactagagtaatggtttgctttccttatctctgtctaatttcaaagagaacgaaggtt 669
Query: 61 tctctaacttttgtcttagcagttctccactcagtgtcagggactgaaatggttagcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tctctaacttttgtcttagcagttctccactcagtgtcagggactgaaatggttagcact 609
Query: 121 ctagaaagctttcttgtttttctctagggtttctcattcacgttgttttggtcttgcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctagaaagctttcttgtttttctctagggtttctcattcacgttgttttggtcttgcaga 549
Query: 181 gcttggattttgtaatgtgcactcctgagt----atagaagaactggggtttggtgatta 236
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 548 gcttggattttgtaatgtgcactcctgagtatagatagaagaactggggtttggtaatta 489
Query: 237 gtgagagagctcgctatcttatctatctttctatacaaaccctgtggcatttcatggttt 296
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgagagagctcactatcttacctatctttctatacaaaccctgtggcatttcatggttt 429
Query: 297 cgggatcccttaacatgaagtcctgagcacttaaaaccaagtatgagggtgccctcgaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cgggatcccttaacatgaagtcctgagcacttaaaaccaagtatgagggtgccctcgaag 369
Query: 357 gtgggggtgagagtcacaaagcagaagcagcagttttctctggggttcactcagccccat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtgggggtgagagtcacaaagcagaagcagcagttttctctggggttcactcagccccat 309
Query: 417 gtatatgtatactcggccctcggccctctgggctgtatttctgtcaggnctattctgttc 476
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 308 gtatatgtatactcggccctcggtcctctgggctgtatttctgtcagggctattctgttc 249
Query: 477 tcctctccatctgacctgattttatggcagtcacgatgagcatgttca 524
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcctctccatctgacctgattttatggcagtcacgatgagcatgttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 928
Length adjustment: 10
Effective length of query: 514
Effective length of database: 918
Effective search space: 471852
Effective search space used: 471852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
