CTTTGTGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAA
AGATCCGCGGAATTCTTTGTTTTTCCCAGTACCCCATTTTTAAAATAGGG
TTATTTGGTTCTCTGGTCTAACTTTTTCAGTTCTTTGTGTATATTAGAGC
CATTTTGTCCTATTGACAGTATACTTTGCCTTACAAAAGATTTTCAACTT
TATGAGGTCCCATTTGTTGATTGTTGATCTTAGGACATACGCCATTGGTG
TTCTGTTCAGGGAATTTTCCCCTTTGTCAATGTGTTCAAGGGTTTTCCCC
ACTTTCTCTTCCATTAGATTCAGTGTATATTATTTTTATGGAGGTAATTG
ATCCACTGGTACTTGAGCTTTGTAAAAGAAGATAAGAATTGATCAATTTG
TATTCTTCTACAAGATGAACCACCAAGCAACATTTGTTAAAGATGCTGCC
TTTTGACTTACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTATAATACCCAAGATACAAGATAAAATGTCGTAAACACATGTAACTC
CAGATTAACTATTACCTTTGTGTGGATCCTTTGCCCCTTTTTATAATTTG
GCATCCAAACCTCTCTTGGTATGTGTTTCCGCACATTTATTTTCGTATTT
TGACCCCCTACTATTGGACCCTTTTCCATGTTGTGCATTATCCCCCTTCA
ACCTTTCCTACATTTCCCACTTTTTTCGTTCACCTCCTATTTCTTTTTTC
TCTCCCCTTTTTTCTTTTTTGG

NAATAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTAGGGATGTATAA
TTAACATATTTTCAGAAAGGCCAGAAATTCAGGGGGAATACCTCAGCAAA
TTCTGAGCACTGCAATATCACTACAGTCTGTAAGTGGTCAATAGACCTAG
CACATTTTAATTTGGGTTAATCAAAGTGCAATTTAAATATTTTATTTGGA
AAAATTTATGAAAACTGTTTCCTTTGTAAGTTTGTTTTGCATACAATATG
CTTCATTGTAATGGGATAATTTAAATAATTTATATTGGAAATTTTTAAAA
CTAACTTATTCAGATTTACAAAAGCCAAGGTATAAAAGTTTTGAATTAAC
TTAAAGTTTTATATAAGAATGTTGATTATTTTAATTCTTATATCAAATAT
AAACAATGAATATTTGTTATTTGTATTTGCTATACAAATAACTACCAGTT
ACCTATTAATATATGTTCATAATTACATACACACAAACACTCACACAAAC
TGCTCAGTCTATAATGTTACCTGTGTGCATGTTCTCCGGGATGACCTTTC
GGCAGAATATAACCAGCTGGCCTTCCTTTCCCCTGCGGAAAATTATCCTT
CTTGTCCTCAACATTTCCTGGGTGGAATGTACTTGGTGATCCTTTGTTGC
ATTTATGTCTGGCTGGCCCTTTTGAATATAACTCCCCCCCTTAAGTCCTC
ATACN

Query= MSMg01no366_k06.g1 MSMg01no366_k06.g1 CHROMAT_FILE:
MSMg01no366_k06.g1 PHD_FILE: MSMg01no366_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:33 2005
         (454 letters)



>mm_chr1_49632420_49633273
          Length = 854

 Score =  847 bits (438), Expect = 0.0
 Identities = 450/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtagggatgtataattaacatattttcagaaaggccagaaattcagggggaatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtagggatgtataattaacatattttcagaaaggccagaaattcagggggaatacct 260

                                                                       
Query: 61  cagcaaattctgagcactgcaatatcactacagtctgtaagtggtcaatagacctagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaaattctgagcactgcaatatcactacagtctgtaagtggtcaatagacctagcac 320

                                                                       
Query: 121 attttaatttgggttaatcaaagtgcaatttaaatattttatttggaaaaatttatgaaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgaatttgggttaatcaaagtgcaatttaaatattttatttggaaaaatttatgaaa 380

                                                                       
Query: 181 actgtttcctttgtaagtttgttttgcatacaatatgcttcattgtaatgggataattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtttcctttgtaagtttgttttgcatacaatatgcttcattgtaatgggataattta 440

                                                                       
Query: 241 aataatttatattggaaatttttaaaactaacttattcagatttacaaaagccaaggtat 300
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacttaaattggaaatttttaaaactaacttattcagatttacaaaagccaaggtat 500

                                                                       
Query: 301 aaaagttttgaattaacttaaagttttatataagaatgttgattattttaattcttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagttttgaattaacttaaagttttatataagaatgttgattattttaattcttatat 560

                                                                       
Query: 361 caaatataaacaatgaatatttgttatttgtatttgctatacaaataactaccagttacc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 caaatataaacaatgaatatttgttatttgtatttgctatacaaataactaccaattacc 620

                                             
Query: 421 tattaatatatgttcataattacatacacacaaa 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 tattaatatatgttcataattacatacacacaaa 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)