Query= MSMg01no366_l01.b1 MSMg01no366_l01.b1 CHROMAT_FILE:
MSMg01no366_l01.b1 PHD_FILE: MSMg01no366_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:36 2005
(254 letters)
>mm_chr1_64890259_64890912
Length = 654
Score = 476 bits (246), Expect = e-139
Identities = 252/254 (99%)
Strand = Plus / Minus
Query: 1 gcttaagccacactgcctgagcttagactggagaggcaggcagtctgtctccttgggata 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcttaagccacagtgcctgagcttagactggagaggcaggcagtctgtctccttgggata 395
Query: 61 aggaaggatttggaacgcagtgaatgtgaggtcttggccccactgtgttttctggtttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aggaaggatttggaacgcagtgaatgtgaggtcttggccccactgtgttttctggtttgt 335
Query: 121 tttgttagcagaagcaagttattctagtttcttgcttctggctttccccctcagcacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttgttagcagaagcaagttattctagtttcttgcttctggctttccccctcagcacact 275
Query: 181 ttaagcaatgagtctccaccccgttgatggcaacgcggtggatggaatgggataatgaaa 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 ttaagcaatgagtctccaccccgttgatggcaacggggtggatggaatgggataatgaaa 215
Query: 241 gggtggacagagac 254
||||||||||||||
Sbjct: 214 gggtggacagagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no366_l01.g1 MSMg01no366_l01.g1 CHROMAT_FILE:
MSMg01no366_l01.g1 PHD_FILE: MSMg01no366_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:36 2005
(441 letters)
>mm_chr1_64740756_64741597
Length = 842
Score = 832 bits (430), Expect = 0.0
Identities = 439/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 1 agacagaatatttagggttttgattttggtccttataatgtgtcattggcattaaaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacagaatatttagggttttgattttggtccttataatgtgtcattggcattaaaagca 260
Query: 61 tttatttctgatgacaatttgatggtaatgttgactttttactagcattaaaattcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatttctgatgacaatttgatggtaatgttgactttttactagcattaaaattcctga 320
Query: 121 tctagattttgtgattcttagtagactatctcaagtctttaattctaaatagatactggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagattttgtgattcttagtagactatctcaagtctttaattctaaatagatactggt 380
Query: 181 gtaagaagtgtgtcagtaatactgatctaaggttaaaaaaaaa-tcaaaaaatggcatta 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtaagaagtgtgtcagtaatactgatctaaggttaaaaaaaaaatcaaaaaatggcatta 440
Query: 240 gatgaagtctagaaatattggaaaactgaaagatacttaactgctttgagtaccctgaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgaagtctagaaatattggaaaactgaaagatacttaactgctttgagtaccctgaga 500
Query: 300 catatttattgaacacctttgaataaccaggcagtattccagaaagagacagtgataaga 359
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 catatttattgaacacctttgaataaccaggcagtattccggaaagagacagtgataagc 560
Query: 360 aaggtagttccttcctataccctgatccttctgttctaaagacaggtgggaatagactga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtagttccttcctataccctgatccttctgttctaaagacaggtgggaatagactga 620
Query: 420 atcatcaagaatgtgctgagct 441
||||||||||||||||||||||
Sbjct: 621 atcatcaagaatgtgctgagct 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space: 359856
Effective search space used: 359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
