Query= MSMg01no367_c18.b1 MSMg01no367_c18.b1 CHROMAT_FILE:
MSMg01no367_c18.b1 PHD_FILE: MSMg01no367_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:15 2005
(494 letters)
>mm_chr1_43238259_43239155
Length = 897
Score = 884 bits (457), Expect = 0.0
Identities = 483/493 (97%), Gaps = 3/493 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgggcttcataccaaaatcgtcacagaattactggtcctatgctagcctttt 64
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 205 gaattcactgggcttcataccaaaatcgtcacagaattactggttctatgttagcctttt 264
Query: 65 aaccattagaccacatctatc---agattaggaagtcagagaaaatgcaccatagagccc 121
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 265 aaccattagaccacatctatcagaagattaggaagtcagagcaaatgcaccatagagccc 324
Query: 122 actgcaccaagacattaagtcgatcatctcttaactccccacaactcaacgcacctagga 181
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 325 actgcaccaagacattaagtcgctcatctcttaactccccacaactcaacgtacctagga 384
Query: 182 atccagcagcatcccctagtagctgagcgactctgggaataagcagggtgtttgctttga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccagcagcatcccctagtagctgagcgactctgggaataagcagggtgtttgctttga 444
Query: 242 acctgatccgggcagtgtgatcaaggaccaggtctttgaggtagtttctctcttcccatc 301
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 acctgatccgggcagtgtgatcaaggaccaggtctttgaggtagtttctcttttcccatc 504
Query: 302 cctgacattggccccagggtaatgatgatattctagatttcgcagcaggactgaggccac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgacattggccccagggtaatgatgatattctagatttcgcagcaggactgaggccac 564
Query: 362 ctcacatctgaacacatgttaagatttgaggaacagccaaaagcagagagatcaccaaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcacatctgaacacatgttaagatttgaggaacagccaaaagcagagagatcaccaaag 624
Query: 422 gcaagatggcaccagcacaaagacgggtcaccttcggttactgggaaaccacttgatttc 481
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaagatggcaccggcacaaagacgggtcaccttcggttactgggaaaccacttgatttc 684
Query: 482 aaaaacttatttc 494
|||||||||||||
Sbjct: 685 aaaaacttatttc 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 897
Length adjustment: 10
Effective length of query: 484
Effective length of database: 887
Effective search space: 429308
Effective search space used: 429308
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_c18.g1 MSMg01no367_c18.g1 CHROMAT_FILE:
MSMg01no367_c18.g1 PHD_FILE: MSMg01no367_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:15 2005
(250 letters)
>mm_chr1_43416990_43417639
Length = 650
Score = 433 bits (224), Expect = e-126
Identities = 242/248 (97%)
Strand = Plus / Minus
Query: 1 actagtgaaaatttcctcccagttcgaaacgaccacgcggacggttcagatggctctgct 60
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 actagtgagaatttcctcccagttcgaaacgaccacgtggacggttcagatggctctgct 389
Query: 61 cggaaacacgctgaatgtttacatggggccatcctttttcagctgcttcgtgatgaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cggaaacacgctgaatgtttacatggggccatcctttttcagctgcttcgtgatgaaggg 329
Query: 121 ttgtggatggtcattgttccctttgttccctcagcttggaaaacagaaaacataacatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgtggatggtcattgttccctttgttccctcagcttggaaaacagaaaacataacatcc 269
Query: 181 aagagacacagcttgtacagccctcacacacagtcggggagccaggggtggggttgagag 240
|||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct: 268 aagagacacagcttctacagccctcacacacagtcagggagccaggggtggagttgggag 209
Query: 241 gtgggtgg 248
||||||||
Sbjct: 208 gtgggtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
