BAC Information

Click to search

BAC

Clone NameMSMg01-367I03
Chromosome1 (Build37)
Map Location 9,678,053 - 9,678,546
singlet/doubletsinglet
Overlap geneMybl1
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik
Downstream geneVcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I03.T7 (MSMg01no367_i03.b1)MSMg01-367I03.TJ (MSMg01no367_i03.g1)
ACCAG474959AG474960
length746748
length of high quality
(start - end)
407 (35 - 441)493 (72 - 564)
definitionCHROMAT_FILE: MSMg01no367_i03.b1 PHD_FILE: MSMg01no367_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:42 2005CHROMAT_FILE: MSMg01no367_i03.g1 PHD_FILE: MSMg01no367_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTTCCT
GTCCCAAAGAACTGCAGGGACAAAAACAGAAAAGAGACCGAGAGAAAGGC
AGCCCAGTAGCTGGCCCAGCTTGGGATCCATCTCAAGGGGAGGCTCCAAG
GCCCGGCACTATTACTGATGCTATGGTGTGCTTACAGACAGAGATTAGTC
TTTTTTAAAGGCAGACTGTGGGCCTAAAGCTCAGTGTCTTGACGCTTGCC
TGATGTGTATGAGGCCCTGATTTCAATCCTTAGCAGCACTATCTTAACAA
GAAAAATAAACCGGGCGTGGTGGAGCATGCCTTTAATCCCAGCACTTGGG
AGGCAGAGGCAGGCCTGGTCTACAGAGCGAGTTCCAGGACTGCCAGCCAG
GACTACACAGAGAAACCCTGTCTCATAAAACAAAAACAAAACTAAACAAA
AAAAAAAAGAAAGAAAGAAAAAAAAGAGAAAAATAGAACGTTGCTCATAG
AGTGTTAAATATTAATTTTTAATCTGGATCTTAATTTTCTGTATGAAGAA
ATAGGTCATTTACTCAAAACACTTCTGCTAAACCCTGAAGTCTAATGACT
GCTGCCCAGCCCTCACGTGACTGTGGGCAGGCTGCGCTGACTACTCGAGC
ATACCACCTCAGGTTTACTTGAAATGAGGATTGGCCGAAGATTGCATTTG
CCACCTTTCTTATTTTGGCAGTAATTTCTTGAAAATGAACAATGAA
TGCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCGACGAAATTCTACTTAAGGCGTGGTGGCCAGCCTG
GTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGT
CTCAAAAGACCAAAAAAAGAAAACATGGATTAAATTTCAGCTATAACTAT
AATTCACAGAAGGTAATGTTAATAATAGCTATCCTTCAGCACTCAACGAG
TTCAAAAATCAATACCCAAAATGCATCAAAAAGTTCAAGGGGCTAATTAC
TCATAGATAATTATTCTGAAGTATTTTGAAGTAACTGAAGTAACATTTGT
ACATTTGTCCTATATTTTGTTTGCTTTTAGTTTAACTAAAATTTAAAGAA
CAGTTCATCTCCTTGGCCCACTTACTTCGCTGCTACTCTGACCCAGCCAA
GTATCACATGAATCACAAAGAATTATGCTCACTCTGTATTGGTAGATTAA
TTAAGTTTAACATCTATCACAATTTTCTTGAAATGTGTCTACTTGTCATA
TTTTTAAAAATAAGACTTACAGGTTAAATGTACAGCTTTGACTATCTGAT
TATAGCTTTCTGGTTTTTCCCTTTTGCCCAGTACTACGTAAGTTCAACAA
GTGCTCTTCCACGAATTATATTCTCATCCCTTTTCTTCATTTCGATTTTT
AAAAGGGCTCTCATTAAGTTAACTCAGTAAGGCCCTAATCTCGGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i03.g1 MSMg01no367_i03.g1 CHROMAT_FILE:
MSMg01no367_i03.g1 PHD_FILE: MSMg01no367_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:42 2005
         (493 letters)



>mm_chr1_9677853_9678746
          Length = 894

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctacttaaggcgtggtggccagcctggtctacagagtgagttccaggacagccaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctacttaaggcgtggtggccagcctggtctacagagtgagttccaggacagccaagg 260

                                                                       
Query: 61  ctacacagagaaaccctgtctcaaaagaccaaaaaaagaaaacatggattaaatttcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacacagagaaaccctgtctcaaaagaccaaaaaaagaaaacatggattaaatttcagc 320

                                                                       
Query: 121 tataactataattcacagaaggtaatgttaataatagctatccttcagcactcaacgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataactataattcacagaaggtaatgttaataatagctatccttcagcactcaacgagt 380

                                                                       
Query: 181 tcaaaaatcaatacccaaaatgcatcaaaaagttcaaggggctaattactcatagataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaaatcaatacccaaaatgcatcaaaaagttcaaggggctaattactcatagataat 440

                                                                       
Query: 241 tattctgaagtattttgaagtaactgaagtaacatttgtacatttgtcctatattttgtt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattctgaagtaatttgaagtaactgaagtaacatttgtacatttgtcctatattttgtt 500

                                                                       
Query: 301 tgcttttagtttaactaaaatttaaagaacagttcatctccttggcccacttacttcgct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tgcttttagtttaactaaaatttaaagaacagttcatctccttggcccacctacttcgct 560

                                                                       
Query: 361 gctactctgacccagccaagtatcacatgaatcacaaagaattatgctcactctgtattg 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctactctgacccagtcaagtatcacatgaatcacaaagaattatgctcactctgtattg 620

                                                                       
Query: 421 gtagattaattaagtttaacatctatcacaattttcttgaaatgtgtctacttgtcatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagattaattaagtttaacatctatcacaattttcttgaaatgtgtctacttgtcatat 680

                         
Query: 481 ttttaaaaa-taag 493
           ||||||||| ||||
Sbjct: 681 ttttaaaaaataag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space:   426972
Effective search space used:   426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)