Query= MSMg01no367_j23.b1 MSMg01no367_j23.b1 CHROMAT_FILE:
MSMg01no367_j23.b1 PHD_FILE: MSMg01no367_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:50 2005
(511 letters)
>mm_chr1_26819679_26820589
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 506/507 (99%)
Strand = Plus / Plus
Query: 5 gaattctcgctgaataagctcacctattcttgatctttcttagctctagctggctgattc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcgctgaataagctcacctattcttgatctttcttagctctagctggctgattc 264
Query: 65 aactcagccattctgacttaacctcctctcctagctgacttattcaatctagcttttctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactcagccattctgacttaacctcctctcctagctgacttattcaatctagcttttctc 324
Query: 125 gtgacctctgaatctctgtgcttgccctcaaattaactctagcaattatttctaatcttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgacctctgaatctctgtgcttgccctcaaattaactctagcaattatttctaatcttg 384
Query: 185 tggctccttctcgttcccttgctcattctgcccctgcctatttctaggttgttcttactc 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggctccttctcgttcccttgttcattctgcccctgcctatttctaggttgttcttactc 444
Query: 245 taaactgtccatgtaagtttctcctggtaagactgcctccttctccctctctgtgtgctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaactgtccatgtaagtttctcctggtaagactgcctccttctccctctctgtgtgctg 504
Query: 305 ctctactctcctcaactgtactgctatccaaaatatctactgtacttatagtgtattata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctactctcctcaactgtactgctatccaaaatatctactgtacttatagtgtattata 564
Query: 365 caagatttctggagaattcaggtacagaaattgagaaagaggagactgaagtacatcttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagatttctggagaattcaggtacagaaattgagaaagaggagactgaagtacatcttg 624
Query: 425 atatttgatggaaaaagagcttaaaaaatacacctttcatctccattataaagtattctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatttgatggaaaaagagcttaaaaaatacacctttcatctccattataaagtattctg 684
Query: 485 taaactacgtcatatagatggcactta 511
|||||||||||||||||||||||||||
Sbjct: 685 taaactacgtcatatagatggcactta 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_j23.g1 MSMg01no367_j23.g1 CHROMAT_FILE:
MSMg01no367_j23.g1 PHD_FILE: MSMg01no367_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:50 2005
(485 letters)
>mm_chr1_26983029_26983913
Length = 885
Score = 899 bits (465), Expect = 0.0
Identities = 481/487 (98%), Gaps = 2/487 (0%)
Strand = Plus / Minus
Query: 1 agaaatgtccattggtacaactgtgtaaacacacagaaaaagcaccaagatcaaccagga 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 852 agaaatgtccattggtacaactgtgtaaacacacagaaaaaacaccaagatcaaccagga 793
Query: 61 aagagacagatctcagaatagagtcttgctgatagctatttctgtgacttctagtcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aagagacagatctcagaatagagtcttgctgatagctatttctgtgacttctagtcatca 733
Query: 121 gaattctgaaaaacaaacaaacaaacaaac--aaaaaaaccaaacaacaacaaaaaaaac 178
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 732 gaattctgaaaaacaaacaaacaaacaaacaaaaaaaaaccaaacaacaacaaaaaaaaa 673
Query: 179 ccaacacattatttttacttgatccatttattataggcattttattttgacagctataag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccaacacattatttttacttgatccatttattataggcattttattttgacagctataag 613
Query: 239 aaacttaaattatataaaatctagatttttgttgttggtgttatttatgtttctttgaag 298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaatttaaattatataaaatctagatttttgttgttggtgttatttatgtttctttgaag 553
Query: 299 tactgctttgtagtagaataaacataagatttaaataaaagtgatcactatgtaagatag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tactgctttgtagtagaataaacataagatttaaataaaagtgatcactatgtaagatag 493
Query: 359 cctaataaacttacaagcactgttcccttgtcctttcagtgctttgaattctttggataa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cctaataaacttacaagcactgttcccttgtcctttcagtgctttgaattctttggataa 433
Query: 419 tcaacaaagttaatacagtagagtcatttcagatgccactatgagcagcagagattcaac 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 432 tcaacaaagttaatacagtagagtcacttcagatgccactatgagcagcagagattcaac 373
Query: 479 ttgccta 485
|||||||
Sbjct: 372 ttgccta 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
