BAC Information

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BAC

Clone NameMSMg01-367M03
Chromosome1 (Build37)
Map Location 153,068,075 - 153,068,318
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
Downstream geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367M03.T7 (MSMg01no367_m03.b1)MSMg01-367M03.TJ (MSMg01no367_m03.g1)
ACCAG475150AG475151
length738844
length of high quality
(start - end)
253 (41 - 293)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no367_m03.b1 PHD_FILE: MSMg01no367_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:01 2005CHROMAT_FILE: MSMg01no367_m03.g1 PHD_FILE: MSMg01no367_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCAAATCGAAGAGGAGGCGCGGAATTCACAACTTTCTTAAAGAAATA
CAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAA
CACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCA
AACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTG
ATGGAAATGAACAAAACCATACTAGACCTAAAAGGGGAAGTAGACACAAT
AAAGAAAACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTATTTTTTA
AATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAA
TAGAGAATCTCAGGTGCAGAAGACTCCATATAGAACATCGGCACAACAAT
CAAAGAAAATGGAAAATGCATAAAGATCCTAACTCAAAACATCCAGGAAA
TCAAGGACTCAATGAGAAGACCTAATCTACGTATAATAGGATTGGATGAG
AATGAAGATTTTCAACTCATAGGATCATCTTATCTCTTCTACACTTTTAT
TGATGATTACTTCTCAAATTTTATTAAAGAGATGTTTTTGACCTTATCAC
AATTCCACTTAACTTCTTCTTTGTCTGGACCAGATTTTATTTTCCTCCTC
GACTTCTAATAATCTGGAACCTCCCCTGCTTTTCCCAATGAAAGTATTTT
TATCCCTCCTATTGCCATATTCCCCTGTTCTTCCTTTG
NTCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTTACCCTTTGTGAGGTT
TCCCCAAGTGTTGTCACCTTTCATAAATGTAGTATAATAACCAACATTCA
GATACGACTGAGTTAGCTGATATTAAGAGTCTTTTCAGGTGTTTTTAGTT
GTCCTAGTTTGTTGCTTTGTTTTATCTTTCATGACATCAACATGTTTGAG
AAGTATTAGCTGTTTTGTAAAATGTCTCTCAGCCTAGACTGATCAATGTT
TCCTGAAGGTTAGGTAGAGGTTATGATTTGTGGGGAGGTTTGTATTTTTT
TCTCTTTCTTTCTTCTTTTCCTTCCTTATTTTTTTTTCATTTTTTCCCTT
TCTCCTCTTTTCTTTTCTTTCTCCTTTCCCTTTCCCTTTTTTCTTTTTTC
TTTCTTTTTTCCCCTTTTTTTTTCTCCCATTCTTCTTTTTCCTCACCCTC
TTCTCTTTTCTTCTTCCTTCTTTCTTCTCCCCCCCCCTCTTTTTCCCTCC
TTATTTTTCTCTCTTTATTTCCTGTTTTTTTTTCTTTATCCCCCTTTTTT
ATTTTCCCCTTTTCTTTTTCTTCCCCTTCCTCTCTTTTTTCTCTTCTCCT
TCCTTCCTTTTTTTTTTCTTCCCTCTCTTTTCTTTTCTTCCCTTTTTTCT
CCTTTTTCCCCCCTCTTTTCGCTTATTGTTTTCTTCTTTCCCTCCCCCCT
CTCTTTTTCCTTTTTACTTTATTATATTTTCTTTTTTTTATTTTTCCTCC
GTTTTTTTTTTCTCTTTTTTTCCTTTCCGCTTTACTCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_m03.g1 MSMg01no367_m03.g1 CHROMAT_FILE:
MSMg01no367_m03.g1 PHD_FILE: MSMg01no367_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:01 2005
         (244 letters)



>mm_chr1_153067984_153068627
          Length = 644

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagttaccctttgtgaggtttccccaagtgttgtcacctttcataaatgtagtataata 60
           |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 335 ttaggtaccctttgtgaggtttccccaaatgttgtcaccttccataaatgtagtataata 276

                                                                       
Query: 61  accaacattcagatacgactgagttagctgatattaagagtcttttcaggtgtttttagt 120
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 275 accaacattcagatacgaccgagttagctgatattaagagttttttcaggtgtctttagt 216

                                                                       
Query: 121 tgtcctagtttgttgctttgttttatctttcatgacatcaacatgtttgagaagtattag 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 215 tgtcctagtttgttgctttgttttatctttcatgacatcatcatgtttgagaagtattag 156

                                                                       
Query: 181 ctgttttgtaaaatgtctctcagcctagactgatcaatgtttcctgaaggttaggtagag 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctgttctgtaaaatgtctctcagcctagactgatcaatgtttcctgaaggttaggtagag 96

               
Query: 241 gtta 244
           ||||
Sbjct: 95  gtta 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)