BAC Information

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BAC

Clone NameMSMg01-368K03
Chromosome1 (Build37)
Map Location 160,484,013 - 160,484,223
singlet/doubletsinglet
Overlap geneAstn1
Upstream geneLztr2, LOC664935, LOC100039217, 6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368K03.T7 (MSMg01no368_k03.b1)MSMg01-368K03.TJ (MSMg01no368_k03.g1)
ACCAG475811AG475812
length7391,003
length of high quality
(start - end)
211 (69 - 279)---
definitionCHROMAT_FILE: MSMg01no368_k03.b1 PHD_FILE: MSMg01no368_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:07 2005CHROMAT_FILE: MSMg01no368_k03.g1 PHD_FILE: MSMg01no368_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCACTAAATGCCGTAGCTGCNCGGAATTCCAGCCT
GGTTACTTGAAGAGGCATCATCTCAATATTCCTCCAAAGAGTCCAGTCTC
AATGTGATGGCACCCTGGCTACCTTATAAAGCAATGATTTTTCTTTCCGG
TAGTTCTAATAGAAGCAAAGTTTCTCTGTCTCCAAAACCCCAGAGTAATA
CGTACCATCCCCCATCACTTAAACTGGAGAGCAAGAGAAAAAAATCTTAG
CCAAACACTGCAGACTAGCACTTCTGAATGGTTGCATTCGTGTTAGTGTC
TGTTCTGAACAATTTTTTTCTCTGCTTTGTTGGCCTGGCTACTGCGGCAG
TGGTGTGGAGGCGAGAATAAGCCCCTGTGTCTGTCGGAGGATGCTAAAAA
AGTGAAGAAAAGGCAAAGCACTCACAGTGTCCGTGAAGCGTTAGGACAGG
CTCTGCTGCTGTTTCTTTCTCTGTCTTGCCTCTGGCTGCGCTCCTACAAT
TGCTGGACTTCCTGAAGTCTCCGCTCACAGTCAGTTAGCTTGACAGAAAG
GATTAGGCTCCATTCAGAATATTGTACATCAGCACAATCCAATGCTGGCA
GTCCCTTGCACTGTCATTTGTGTGATCGAAATTGACACTGGTGTTATGTG
TTTGATTTATTTCTCTTCCTACCTGAACCCTCTTGTTAGCCCTAACTCTG
ATGTTGTCTATCCTGTTCCCATTTCTTTGCTTCTATTTG
AGGTCTTGCGCGAGGGCGGCGGGGAACAAGGGGTCCCCGTTAGGTTTTGT
GGATTTCATTCGACACCCCCTCCCATATTCCCACTTTAAAAACAAGAATA
ACTACAGAAGTTTTCTTAAAGAAAAAAAACTGCTTGTAAAATTGATTAAA
CGCGCTACCCTAACGAGCAGCCGATTCCCAACACGGGGCCTCGTCGAGGT
AGTCGACCTTCTACAGTCCAAACATTGAACAGTACGACCTTTGTTTTTGA
TCACTATCAGCTCCCAACTGGGAGCCCTACACGTGGTAATAGGGGGGTAG
ATTGGCGAACAAGCTATGAGAAAGGAAAAGAGATAAGAAATCTTTGGGTG
ATGGTTTTGGCGGGTCTTGGGGCTTTCTTCCTCGGTCGAATATAGCCACC
AAAAAAAAAAACATAAATTTCAACATATAAAAAAAACAAACAAACACCCG
CCCCGCTCCGCCCGTGCTCACGGTAGAGAGGAAATATAAATGACATTTAA
CCACTGGAGAACCCAGATAAGAAGAGTTGCCACTAACAACAACATTACAC
GTTAATAGACAATAAAGCTTTCCTCATGTGAACCAGATATGAATAAATAA
AAATATTCGGAGGCCAACCCAAACAATACTCCACAAGAAACACCTGGCCA
TAAACGCTAACGCGTGCAAGCAAAGCGGCAACGATTGAAAGAGAGCGACG
TGGAAGCGGCGAGCGTGGGTGCGAAAATCCATCGACACGACCAAACATAT
TAAAACCAACAAACAATATTATAACCCNNNNNNCAAATGCACAGAGGATT
ATAANNNNNNNNCGGCAAACTTTNCCATCTTNTGCNNNNNNTNTAGNANN
NCAGTAAATGGCAANAANNAGACCCNNGTNNNGNNNNCCTTTNNNGNACN
NTNNNTTAANNNNGGNNNTNNANNNACNNNNNTNANNTGNNANNNAGNNN
ANATTNNNCCNTGTNNNANNNNNNNATGCNAGNNCNANNNGNNNTATCGA
NTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_k03.b1 MSMg01no368_k03.b1 CHROMAT_FILE:
MSMg01no368_k03.b1 PHD_FILE: MSMg01no368_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:07 2005
         (211 letters)



>mm_chr1_160483813_160484423
          Length = 611

 Score =  354 bits (183), Expect = e-102
 Identities = 204/211 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctcaatattcctccaaagagtccagtctcaatgtgatggcaccctggctaccttata 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctaaatattcctccaaagagtccagtctcaatgtgatggcaccctggctaccttata 260

                                                                       
Query: 61  aagcaatgatttttctttccggtagttctaatagaagcaaagtttctctgtctccaaaac 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 261 aagccatgatttttctttccggtagttctaatagaagcaaagtttctctgtctctgtaac 320

                                                                       
Query: 121 cccagagtaatacgtaccatcccccatcacttaaactggagagcaagagaaaaaaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 cccagagtaatacgtaccatcccccatcacttaaactggagagcaagagaaaaaaatcaa 380

                                          
Query: 181 agccaaacactgcagactagcacttctgaat 211
           |||||||||||||||||||||||||||||||
Sbjct: 381 agccaaacactgcagactagcacttctgaat 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)