BAC Information

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BAC

Clone NameMSMg01-368N21
Chromosome1 (Build37)
Map Location 14,670,790 - 14,671,240
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneMsc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368N21.T7 (MSMg01no368_n21.b1)MSMg01-368N21.TJ (MSMg01no368_n21.g1)
ACCAG475991AG475992
length761764
length of high quality
(start - end)
501 (47 - 547)451 (69 - 519)
definitionCHROMAT_FILE: MSMg01no368_n21.b1 PHD_FILE: MSMg01no368_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:26 2005CHROMAT_FILE: MSMg01no368_n21.g1 PHD_FILE: MSMg01no368_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAATTTTTCCAGACTTTTATCATAAATGGGTGTTGGATTTTGT
CAAACGCTTTCTCCGCATCTAACAAGATGATCATGTGGTTTATGTCTTTG
AGTTTGTTTATATAGTGGATTACGTTGATGGATCTCCACATATTAAACCA
ACCCTGCATCCCTGGAATGAAGCCTACTTGATCATAATCGATCATCATTT
TGATGTTCTTGGATTCGGTTAGTGAAAATTTTATTGAGTATTTTTGCATC
GATATTCATAAGGGAAATTGGTCTGAAGTTCTTTTTCTGTGTTGGGTCTG
TATGTGGTTTAACTATCAGAGTAATTGTTGCTTCATAGAATGAATTGGGT
AAAGTACCTTCTGTTTCTATTTTGTAGAATAGTTTGAGGAGAATTGGAAT
TATGTCTTCTTTGAAGGTCTGAGATAACTCTGCACTAAACCCATGTGGCC
CTGGGCTTTTTTTGGTTGGGAGACTATTAATGATTACTTCTGTTTCTTTA
GGAGATATGGGACTGTTTAGATAATTAACCTGATCCTGATTTAATTTTTG
GACCTGGNATCTGTCTAGGAATTTATCACTTCTTCCCGTTTTTCCAGGTT
TGTGAGGATAGCCCTTGTAATAAGAACTAAGATGGTTTGGATTCCCCCGG
GTCTTTTTCGATGTCCCCCCTTTTAATTCGGAATTTGTAAGGCCCCCCAA
TTTTCTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCCTCCACAAAGGCTTCCCCTCCTAAAGAAT
GCATAACTTCTCCAGTGTCGCCAATTGAAAACCAAGCAATCAAGTACACG
AACACATAGGAGCTTTATTATTCAAACCACAACAGTATGAGACTGACATG
ATCCATAACTTGTCTGCCTGAATGAAGAGAGATTAATTTACACCAGGGAA
GTTCGGTAGCAAACGTGTGGAGCTTTAAAACGACATAAAATTCACAATAA
TGCAATATTGTTTTAAAGTGTACCAACTATGAGATCAGAGCCCATAAGGC
TGAGTCTTACCTTGACAGCTGATCTGAAGGTGAGCTGAGGCAAAACAATG
CCGACAAAGGCTCCAACAGTTACCCTGCTGCTGGAGGCAGCTCAGGATGA
GAGCCATACAAATACCACGTTACTAAGAATAATACTAATTCTACATTAAA
CCCTTCAGACTGTACTTTAAATCTGAAATCATAAAAACAAGTATAAGAAA
AAGTCAAAAGAAAATGTTCATTTATATAATAAACCCAAATTTCATTTTCA
ACTTACAAAATACATCATGGCATATTTAACCAATCAATCATGTCTTGGTA
AATGTTTAAAATTTACTGTTAGCCCCAGAAATAAAGCTTCATTGCCACTA
AAAAATCTAAACGGAAAATTCCGTAACTTTTTGTTAGCCAACCGAGGAAA
TATAGCCTTTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_n21.g1 MSMg01no368_n21.g1 CHROMAT_FILE:
MSMg01no368_n21.g1 PHD_FILE: MSMg01no368_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:26 2005
         (451 letters)



>mm_chr1_14670590_14671440
          Length = 851

 Score =  803 bits (415), Expect = 0.0
 Identities = 442/451 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctccacaaaggcttcccctcctaaagaatgcataacttctccagtgtcgccaattga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttcctccacaaaggcttcccctcctaaagaatgcataacttctccagtgtcgccaactga 260

                                                                       
Query: 61  aaaccaagcaatcaagtacacgaacacataggagctttattattcaaaccacaacagtat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccaagcaatcaagttcacgaacacataggagctttattattcaaaccacaacagtat 320

                                                                       
Query: 121 gagactgacatgatccataacttgtctgcctgaatgaagagagattaatttacaccaggg 180
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactaacatgatccataacttctctgcctgaatgaagagagattaatttacaccaggg 380

                                                                       
Query: 181 aagttcggtagcaaacgtgtggagctttaaaacgacataaaattcacaataatgcaatat 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttcagtagcaaacgtgtggagctttaaaacgacataaaattcacaataatgcaatat 440

                                                                       
Query: 241 tgttttaaagtgtaccaactatgagatcagagcccataaggctgagtcttaccttgacag 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgttttaaagtgtaccaactatgagatcagagcccgtaaggctgagtcttaccttgacag 500

                                                                       
Query: 301 ctgatctgaaggtgagctgaggcaaaacaatgccgacaaaggctccaacagttaccctgc 360
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ctgatatgaaggtgagctgaggcaaaacaatgccgacaaaggctccaacagttatcctgc 560

                                                                       
Query: 361 tgctggaggcagctcaggatgagagccatacaaataccacgttactaagaataatactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tgctggaggcagctcaggatgagagccatacaaataccacgttactaagaataataccaa 620

                                          
Query: 421 ttctacattaaacccttcagactgtacttta 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 ttctacattaaacccttcagactgtacttta 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)