BAC Information

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BAC

Clone NameMSMg01-369B11
Chromosome1 (Build37)
Map Location 37,982,367 - 37,982,723
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776
Downstream gene2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3, Lonrf2, Chst10, EG625775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369B11.T7 (MSMg01no369_b11.b1)MSMg01-369B11.TJ (MSMg01no369_b11.g1)
ACCAG476163AG476164
length736769
length of high quality
(start - end)
362 (28 - 389)349 (66 - 414)
definitionCHROMAT_FILE: MSMg01no369_b11.b1 PHD_FILE: MSMg01no369_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:43 2005CHROMAT_FILE: MSMg01no369_b11.g1 PHD_FILE: MSMg01no369_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCCCTTCTGGT
GGATGGGGAAGTGGAATAGTCAATCACAGCTCTTCTTACTTCTCAGGTTT
AAGTTGGGGATAAAGGCTAGACTATGAGTTTTGAAGGAGCCGAAACTAGA
GGGGAAAAAATAGCTCTATATCCTCTTTTATGACCTGTGTGCCCCTTTGC
CTATCTTCTGTCCACCCTGTCACCTACTCTCAGTTTCCGTGTCTCCGTTC
TGAATTTTAGGCTCCACCCACCATTCCACAATTCATTTCCAAACCTGCTT
CCATCTAAGCGTTGTCTGAACATTACACAAAAGTAAAACCCAAAATCCAT
CCTTTCCTCTTCAACTTTGATAACGCTGTGCTGGGTGTTCAACAATGAAA
ACCTGAAAGATTAAATCTACGATAAAAGGGGCCAAAATGAACCACCCATA
TCGAACCTTGCCCTCCACGGGAAGACCCATACCACGGAACATCAGGACCC
CTCCCACCACACCTACCAGGACTGCCAATTGCCTTCCTCTTCACGCGCCT
CACGTTTTCTCCTCCCGCTTTCCCCTCCCCCCCCCTCCCCTTCCCCCCCC
GATCCTCTCCCTGCTCTTTCCCTCTTCTCCCCCCCCCCCCCCCCCCCCCT
CCTCTTTCCTCCCTTTCCCCCCTCCCCCCCTTCTTCCCTTCCTTTCCCTC
TCCCCTTCTCCCCCCCTCTCCCCTCTCCTTATTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGAAAGTCCTTAATTTATTTCTTTCCTGACCCAG
AGATCATTGAGTATGTTCAAGTTTCATGAATGTGTAGGCTTTCCAGTGTT
TCTGTTGTTGAAGTCCAGCTTTAAATCATGGTGGTCTGGTAAGATACAAG
GCATTATTGCAATTTTCTTATATCTGTTGAGGCTTGCTTTGTGACTGACT
GTATGATCAATTTTGGAGAAGGATCCATGAGATGCTAAGAAGAATGTGTA
TTCTTTTGTGTTTGGTTGAAATATTCTATAGATATCTGTTAGGTCTGTTT
GATTCATAATGTCTGTTAGTTTCATTGTTTCTTGGTTTAGTGTTTGTCTG
GATGACCTGTCAGTTGTTGAGAGTGGGGTATTGAAATCTCCCACCATTAA
TGTGCCGGTTTAGATGCGTGATTTAAGCTTTATCAGTGTTTCCTTTACAA
ATGTGTGTGCCCTTGTGTTTGGGCCATAATTGCTCTTGACTGATAGACTG
TCTCTTTGTAAAATTCTTTCTTTTATTATGAATTGTCCTTCCTTGTCTTT
TTTTGATTTATTTCGTTTTTAATTTCCCCATATTTTTTTTAATCGCTTTC
TACCGCCAGTTTTTTTTTCCTTTTTTTTCTTGTATTTCTCTCTCTTTCCT
GTCTCTTTCCATTCTTGATTTTTTTGTACTTTTTCTTTTCGTATCATTAT
ATCATTCCTTCCTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_b11.b1 MSMg01no369_b11.b1 CHROMAT_FILE:
MSMg01no369_b11.b1 PHD_FILE: MSMg01no369_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:43 2005
         (362 letters)



>mm_chr1_37982163_37982923
          Length = 761

 Score =  646 bits (334), Expect = 0.0
 Identities = 352/358 (98%), Gaps = 1/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcccttctggtggatggggaagtggaatagtcaatcacagctcttcttactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcccttctggtggatggggaagtggaatagtcaatcacagctcttcttactt 264

                                                                       
Query: 65  ctcaggtttaagttggggataaaggctagactatgagttttgaaggagccgaaactagag 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaggtttaagttggggataaaggctggactatgagttttgaaggagccgaaactagag 324

                                                                       
Query: 125 gggaaaaaatagctctatatcctcttttatgacctgtgtgcccctttgcctatcttctgt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gggaaaaaatagctctatatcctcttttatgacctgtgtgcccctttgcctatcttttgt 384

                                                                       
Query: 185 ccaccctgtcacctactctcagtttccgtgtctccgttctgaattttaggctccacccac 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ccaccctgtcacctactctcagtttctgtgtctccgttctgaattttaggctccacccac 444

                                                                       
Query: 245 cattccacaattcatttccaaacctgcttccatctaagcgttgtctgaacattacacaaa 304
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattccacaattcatttcaaaatctgcttccatctaagcgttgtctgaacattacacaaa 504

                                                                     
Query: 305 agtaaaacccaaaatccatcctttcctcttcaactttgataacgctgtgctgggtgtt 362
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtaaaacc-aaaatccatcctttcctcttcaactttgataacgctgtgctgggtgtt 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 761
Length adjustment: 9
Effective length of query: 353
Effective length of database: 752
Effective search space:   265456
Effective search space used:   265456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)