BAC Information

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BAC

Clone NameMSMg01-369D02
Chromosome1 (Build37)
Map Location 29,386,121 - 29,386,413
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369D02.T7 (MSMg01no369_d02.b1)MSMg01-369D02.TJ (MSMg01no369_d02.g1)
ACCAG476239AG476240
length816768
length of high quality
(start - end)
298 (37 - 334)471 (73 - 543)
definitionCHROMAT_FILE: MSMg01no369_d02.b1 PHD_FILE: MSMg01no369_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:51 2005CHROMAT_FILE: MSMg01no369_d02.g1 PHD_FILE: MSMg01no369_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGT
TCCCTTGATGATGAGCTCTGCCAGTAATTGTAAGTCAAAGAAATATTTCC
CTTTCTTTCTCCAAGTTGCTGTTGGTTAGTATTTCACCAATGTTAATGAA
AGGAAACTAGAATGTCATAATATTTATTTAAAATATTGTTTGATGCTATA
ATGTAAAATTAAATGTATGAATCCCCACTAAAGTTAAAAGAGAACTATAC
AATGATTATACCTATTATAAAGGTGATTTGTTTTATAGCATTTATTATTT
AAGAATATTTTTTTCTAGTTTTCATTGTTTCCACTAGCTTCTAGCTTCTA
CTTCAGTCCAGGCGATGCTTACGATGTTGATGACTGTATGCTTAACATCT
AATAAAAATTAACCTACTGGACACTTATCTTCTTATCATAATTTAGAAAG
AAATAGCTTGACTTATAATCCTTATTACAAATTTTTTTTTCTGGTATCCT
TGTGCACTTTCTTATTTATCACCTCTCCTCTTTTTTTTCATTGTTAACTT
ATATTTATTCTCTTCTTACTCTTTATCTTCTTTTTTTTTTTATTTTTTTA
TTCCTTCCCTCTCATATTTTTTTTGCCTTTTATTTTCNCCCATCTTTCCC
CCAATTTCTCTTCTTTTTTTTGACCCATTTTATCTTTTTTTTTCTTCTTC
TTTTTTTTATTTTCATTAATTTTTCTTATTTTTCCTTGTTCCTTTTTTCC
CTTTATTCTATTTTTTCTCTTCTTCTTTTTTTATTCCCTCTTCTTCTCCT
CACTCTTATTTTCTTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGGAGA
ACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCT
AAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAATCAAACAGGT
AGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAA
TGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAA
ACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGG
AACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAA
TCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGAA
AATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGA
CACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAG
ATTTTCAACTCTAAGGACCAGCAAACATCTTCAACAAAATATTGAAGAAA
ACTTCCCAAATCTAAAGAAAGAGATGCCCATGATCTTACTAGAAGCCTAC
AGAAACTCTAATAGACTGGACCCAATAAAGAATTTCCTCCCGACACATAT
TTAACCAAAACACCCAATGGGCTATCTTTTGTATGTAAACTCACTTTCTT
TAGGGATAAAAGGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_d02.b1 MSMg01no369_d02.b1 CHROMAT_FILE:
MSMg01no369_d02.b1 PHD_FILE: MSMg01no369_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:51 2005
         (298 letters)



>mm_chr1_29385917_29386613
          Length = 697

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgttcccttgatgatgagctctgccagtaattgtaagtcaaagaaatatttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgttcccttgatgatgagctctgccagtaattgtaagtcaaagaaatatttcc 264

                                                                       
Query: 65  ctttctttctccaagttgctgttggttagtatttcaccaatgttaatgaaaggaaactag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttctttctccaagttgctgttggttagtatttcaccaatgttaatgaaaggaaactag 324

                                                                       
Query: 125 aatgtcataatatttatttaaaatattgtttgatgctataatgtaaaattaaatgtatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtcataatatttatttaaaatattgtttgatgctataatgtaaaattaaatgtatga 384

                                                                       
Query: 185 atccccactaaagttaaaagagaactatacaatgattatacctattataaaggtgatttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccccactaaagttaaaagagaactatacaatgattatacctattataaaggtgatttg 444

                                                                 
Query: 245 ttttatagcatttattatttaagaatatttttttctagttttcattgtttccac 298
            ||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ctttatagcagttattatttaagaatatttttt-ctagttttcattgtttccac 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 697
Length adjustment: 9
Effective length of query: 289
Effective length of database: 688
Effective search space:   198832
Effective search space used:   198832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)