BAC Information

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BAC

Clone NameMSMg01-369D04
Chromosome1 (Build37)
Map Location 115,431,722 - 115,432,083
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369D04.T7 (MSMg01no369_d04.b1)MSMg01-369D04.TJ (MSMg01no369_d04.g1)
ACCAG476243AG476244
length751749
length of high quality
(start - end)
366 (40 - 405)459 (76 - 534)
definitionCHROMAT_FILE: MSMg01no369_d04.b1 PHD_FILE: MSMg01no369_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:51 2005CHROMAT_FILE: MSMg01no369_d04.g1 PHD_FILE: MSMg01no369_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATATGCTTCCAGGCTAACAATGAGGGTCAACCATCGAAGTATCTCTTCTC
TTGTCCTTCAGTGTTGAGTGGTTTGTGCTTCCCACAGGCTTGCTTTAGAA
CCCATAGAGCCACTGGAGAGAAGAGATGGTGTCCCACATATCATCCCCCA
CTGGCATGTTTAGGGATCCTTTGCAAAACTGAATCATGTTCTTAACAGGG
ACGGTGTGCTTTCTTCCATGTCAGAGATGTCCTGCCTCTGCTATCATTTG
CCACAAATAAAAGAAATTAATTGCTAGGAATTAAAGCAGAGAGTGTACAG
TACCACAGTGTGTGAGGTTTGTCCTCATATGACTTTATTTTCACACTTTC
CTGTTCTAAACCAGCATTCATGTCGATGTGATATAGGAGCTCACTATATT
TGAGACTTTGAATTTTCTAACTAATTATAGCAAAATTTTTTTTTATGTAT
TGATATCTCTGTCCTTCCCTTCTGATCCTCTTTATTTTACTATCTTGTTT
GTCTCATAATCCGCTTTAAATTCTTTTCTTTTTTCTTTTCTCTCTTTTTT
TCTCTTTTTCCCCCCTTTTTCCCTTCCTATGCTCTTTCCCCCCTTTCTTT
TTATTCTTCCCTTTTTTTTTTCTTTTTTCCCTTTTTTTTTTTTTATTTCT
TTTTTCCTTTTCCTCTTTTTTTTTTTTTCTTTTCCTTTTTTCTTTTTTTC
T
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCAAATGAGAATAAATTCTGGTT
ATAAATAATTCTTATTGTGTTCTTGATGTATATTTTTTTGACTCTTTTGG
ATATTTTCTTTATTTACATTTCAAATGTTTTCCCTTTTCCTGGTTTCCCC
TCTGAAAACCCCTTCCCCTATCACATTCCCCCTCCCCCTGATCTCCACCC
CATCTACTTCTTCTTCTAGGCCCTGGCATTCCCTTCACTGGGGCATAGAC
CCTTCACAGGACCAAAGGCCTCTTCTCTAATTGTTGTCACATTAGGCCAT
CCTCTGCTACATATGAAGCTGGAGCCATGAGTCCCACCATGTGTACTCTT
TGGTTGGTGGTTTAGTCTCTGAGAGCTCTGGCAGTACTGGTTAGTTCAAA
TTATTGTTCCTCCTATGGGGCTGCAAAACCTCTCAACTCCTTAGGTCCTC
ACTCTAGTTCCTTCATTGGGTACTCTGTACTCAGTCTCATGGATGACTGT
GAGCATCCACTTCTGTATTTTGTCATACACTGTCAGAGCCTCTCCAGATA
TCGCTATATCATGTTCCCTGTAACAAGCACTTGCCTTCCCCATTATGGTC
TGGGCTTGTGTGATGTGTAATTCAAGGAATTCCCACACGCGTCATTTTTT
GGTAATTTTTTTTTTTTCCCCCCCGCTTTCTACCTTGGTCTTGGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_d04.b1 MSMg01no369_d04.b1 CHROMAT_FILE:
MSMg01no369_d04.b1 PHD_FILE: MSMg01no369_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:51 2005
         (366 letters)



>mm_chr1_115431518_115432283
          Length = 766

 Score =  630 bits (326), Expect = 0.0
 Identities = 353/362 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatgcttccaggctaacaatgagggtcaaccatcgaagtatctcttctcttg 64
           |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattccatatgcaaccaggctaacaatgagggtcaaccatcgaattatctcttctcttg 264

                                                                       
Query: 65  tccttcagtgttgagtggtttgtgcttcccacaggcttgctttagaacccatagagccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttcagtgttgagtggtttgtgcttcccacaggcttgctttagaacccatagagccac 324

                                                                       
Query: 125 tggagagaagagatggtgtcccacatatcatcccccactggcatgtttagggatcctttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagagaagagatggtgtcccacatatcatcccccactggcatgtttagggatcctttg 384

                                                                       
Query: 185 caaaactgaatcatgttcttaacagggacggtgtgctttcttccatgtcagagatgtcct 244
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 385 caaaactgaatcatgttcttaacagggacagtgtcctttcttccatgtcagagatgtcct 444

                                                                       
Query: 245 gcctctgctatcatttgccacaaataaaagaaattaattgctaggaattaaagcagagag 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctctgctatcatttgccaaaaataaaagaaattaattgctaggaattaaagcagagag 504

                                                                       
Query: 305 tgtacagtaccacagtgtgtgaggtttgtcctcatatgactttattttcacactttcctg 364
           ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 tgtccactaccacagtgtgtgaggtttgtcctcatatgactttcttttcacactttcctg 564

             
Query: 365 tt 366
           ||
Sbjct: 565 tt 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)