This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-369G21
Chromosome
1 (Build37)
Map Location
127,293,917 - 127,469,899
singlet/doublet
doublet
Overlap gene
Actr3
,
Slc35f5
Upstream gene
LOC666998
Downstream gene
Lypd1
,
E030049G20Rik
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC666998
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666998
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Actr3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74117
MGI:1921367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Slc35f5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74150
MGI:1921400
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lypd1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:72585
MGI:1919835
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
E030049G20Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:210356
MGI:2686394
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs
name
Actr3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:23956221
GeneID:74117
MGI:1921367
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ARP3 actin-related protein 3 homolog (yeast)
transcript_id
: NM_023735.1
name
Slc35f5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142376995
GeneID:74150
MGI:1921400
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: solute carrier family 35, member F5
transcript_id
: NM_028787.3
name
Lypd1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:126352408
GeneID:72585
MGI:1919835
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Ly6/Plaur domain containing 1
transcript_id
: NM_145100.3
name
E030049G20Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:126362964
GeneID:210356
MGI:2686394
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA E030049G20 gene
transcript_id
: NM_176957.3
name
E030049G20Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:126362960
GeneID:210356
MGI:2686394
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA E030049G20 gene
transcript_id
: NM_001081756.1
name
E030049G20Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:126362963
GeneID:210356
MGI:2686394
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA E030049G20 gene
transcript_id
: NM_172484.3
name
Actr3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23956222
CCDS:CCDS15242.1
GeneID:74117
MGI:1921367
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA]
codon_start
: 1
note
: actin-related protein 3 homolog
product
: ARP3 actin-related protein 3 homolog
protein_id
: NP_076224.1
name
Slc35f5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21311933
GeneID:74150
MGI:1921400
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: solute carrier family 35, member F5
protein_id
: NP_083063.1
name
Lypd1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27753962
CCDS:CCDS15243.1
GeneID:72585
MGI:1919835
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0048503 - GPI anchor binding [Evidence IEA]
codon_start
: 1
product
: Ly6/Plaur domain containing 1
protein_id
: NP_659568.2
name
E030049G20Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:126362961
GeneID:210356
MGI:2686394
definition
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; peripheral clock protein
product
: Nck-associated protein 5 isoform 1
protein_id
: NP_001075225.1
name
E030049G20Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51592067
GeneID:210356
MGI:2686394
definition
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; peripheral clock protein
product
: Nck-associated protein 5 isoform 2
protein_id
: NP_766072.2
name
E030049G20Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:126362965
GeneID:210356
MGI:2686394
definition
codon_start
: 1
note
: isoform 3 is encoded by transcript variant 3; peripheral clock protein
product
: Nck-associated protein 5 isoform 3
protein_id
: NP_795931.2
name
LOC666998
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666998
definition
number
: 2
pseudo
: _no_value
name
LOC666998
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666998
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:123052
definition
standard_name
: 10.MMHAP84FLD1.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:128945
definition
standard_name
: D1Mit89
name
(CDS detail)
type
STS
link
xref
UniSTS:128947
definition
standard_name
: D1Mit90.1
name
(CDS detail)
type
STS
link
xref
UniSTS:122813
definition
standard_name
: 05.MMHAP3FRB8.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:128495
definition
standard_name
: D1Mit158
name
(CDS detail)
type
STS
link
xref
UniSTS:128949
definition
standard_name
: D1Mit92
name
(CDS detail)
type
STS
link
xref
UniSTS:128952
definition
standard_name
: D1Mit95
name
(CDS detail)
type
STS
link
xref
UniSTS:128786
definition
standard_name
: D1Mit421
name
(CDS detail)
type
STS
link
xref
UniSTS:128787
definition
standard_name
: D1Mit421.1
name
(CDS detail)
type
STS
link
xref
UniSTS:164125
definition
standard_name
: AI646727
name
(CDS detail)
type
STS
link
xref
UniSTS:128473
definition
standard_name
: MPC1205
name
(CDS detail)
type
STS
link
xref
UniSTS:128474
definition
standard_name
: D1Mit138.1
name
(CDS detail)
type
STS
link
xref
UniSTS:128950
definition
standard_name
: D1Mit93
name
(CDS detail)
type
STS
link
xref
UniSTS:145222
definition
standard_name
: AU048772
name
(CDS detail)
type
STS
link
xref
UniSTS:125274
definition
standard_name
: MHAa67e10.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:165095
definition
standard_name
: AI853363
name
(CDS detail)
type
STS
link
xref
UniSTS:165096
definition
standard_name
: AI853408
name
(CDS detail)
type
STS
link
xref
UniSTS:124203
definition
standard_name
: 36.MMHAP94FRD12.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:128530
definition
standard_name
: D1Mit192
name
(CDS detail)
type
STS
link
xref
UniSTS:128951
definition
standard_name
: D1Mit94
name
(CDS detail)
type
STS
link
xref
UniSTS:125307
definition
standard_name
: MHAa74g4.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:128953
definition
standard_name
: D1Mit96
name
(CDS detail)
type
STS
link
xref
UniSTS:128948
definition
standard_name
: D1Mit91
name
(CDS detail)
type
STS
link
xref
UniSTS:128475
definition
standard_name
: D1Mit139
clone name
MSMg01-341L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-388K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359I01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-232A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-450P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-442E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-069L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049E22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113L07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-394J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-519G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-471P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325O12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521F14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-289O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323D16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392M08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-047K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432N04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-448L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430P22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-367F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387D11
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-133M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-152C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-168P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373B01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-168M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304B01
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-337D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439E05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442N07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166F13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-157E20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-349J12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-117C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-303J05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-139H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-306O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-049I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346A05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-275P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-024L06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-307M02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-036E09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-293L24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-248B01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-237C22
singlet/doublet
doublet
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