Query= MSMg01no369_j23.b1 MSMg01no369_j23.b1 CHROMAT_FILE:
MSMg01no369_j23.b1 PHD_FILE: MSMg01no369_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:24 2005
(344 letters)
>mm_chr1_45403193_45403936
Length = 744
Score = 522 bits (270), Expect = e-152
Identities = 318/336 (94%), Gaps = 8/336 (2%)
Strand = Plus / Plus
Query: 13 gaattcattttaatgaactaatcattaaatttcaaatatttttcttaaatcactcctggt 72
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 213 gaattcattttaatgaactaatcattaaatttcaaatttttttcttaaatcactcctgtt 272
Query: 73 tttatctactgtgacatgtttaattttatttttcattaccaagatatatttattatataa 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttatctactgtgacatgtttaattttatttttcattaccaagatatatttattatataa 332
Query: 133 aattagtcttaatattttcaaaatttaaaatactatttaaaatattt--tttcagttttt 190
| |||||||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct: 333 agttagtcttaatattttcaaattttaaaatactatttaaaat---tactttaagttttt 389
Query: 191 aaatatcttgagagagaccactgcttttactcagactatcttctgggcattaattaaaat 250
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaatatcttgagagagaccgctacttttactcagactatcttctgggcattaattaaaat 449
Query: 251 aagaaataagtacaagttaagttaaaatatgccataaatatggactatagtgttatcttt 310
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 450 aagaaataagtacaaattaagttaaaatatgccataaatatggacaatagtgttatcttt 509
Query: 311 aaaataaaagatgatatttaga-anaataaa-caca 344
||||||||||||||||||||| | |||||| ||||
Sbjct: 510 gaaataaaagatgatatttagaca-aataaaacaca 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_j23.g1 MSMg01no369_j23.g1 CHROMAT_FILE:
MSMg01no369_j23.g1 PHD_FILE: MSMg01no369_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:24 2005
(252 letters)
>mm_chr1_45545451_45546102
Length = 652
Score = 426 bits (220), Expect = e-124
Identities = 241/248 (97%)
Strand = Plus / Minus
Query: 1 cacaggagtccccagaattcttttctttatgatgtgcctttagtgccttcctttgcctgc 60
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 448 cacaggagtccccagacttcttttctttatgatgtgccttcagtgccttccttttcctgc 389
Query: 61 tgtaggtgactaaatatttttgatttgtcttttcttcctaaggaagttcaacaacttaat 120
||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 388 tgtaggtgattaaatatttttgatttgtcttttcttcctaaagaagttcaagaacttaat 329
Query: 121 tagtatttgaacagaatctttgcttctgtgcagttggcagtgtaggaaaatcaggggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tagtatttgaacagaatctttgcttctgtgcagttggcagtgtaggaaaatcaggggaga 269
Query: 181 gggtttggagagtattaagtaaagaagagtgcaagcaattaattccaatctatggttgag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gggtttggagagcattaagtaaagaagagtgcaagcaattaattccaatctatggttgag 209
Query: 241 ataggtga 248
||||||||
Sbjct: 208 ataggtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
