BAC Information

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BAC

Clone NameMSMg01-369K07
Chromosome1 (Build37)
Map Location 187,404,658 - 187,589,173
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
Downstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369K07.T7 (MSMg01no369_k07.b1)MSMg01-369K07.TJ (MSMg01no369_k07.g1)
ACCAG476579AG476580
length781783
length of high quality
(start - end)		371 (36 - 406)239 (111 - 349)
definitionCHROMAT_FILE: MSMg01no369_k07.b1 PHD_FILE: MSMg01no369_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:25 2005CHROMAT_FILE: MSMg01no369_k07.g1 PHD_FILE: MSMg01no369_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,404,658 - 187,405,025)(187,588,937 - 187,589,173)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATAT
GTATACCAGTTAGCCTCAAGATCAGAGATCAACCTATTCCTGCCTTTCAA
GTGCAGGGGCTAAAGGTATGCACTATCATGCCCAGCCTACTTTATTTTCA
GGGAACCAGCTCTGTTTCACTGGGACTTTGTATTTATATACATTAAGTAC
ATTTTAATCTTTTTTAAACTTGAAACAACATCTTGCATCTTATTAAATAA
TAATACAATGAAACTAGGAACCAACACCAAGAAAAATTGTCTAAACGGTA
AATCTGTGTGGAGAGCAGCCAGGGCATGTTCACAGGAGGGTGAGCCACTG
ATGCCAGGGTGAGGCTAAATTCACGGAATCAAAAGATAATGAAAGCACAG
CATGTCAGAATCTGTGTGATATAACAGAGACAGTTCTAGGGAAAATGTAT
AGCTCTGATATTTTATATTTAAAACTATTAATACCCATTGCTTATGGTTA
AGGTCACTGTTTAACAGTACTTGCTTGCTGTTAACTTATAGAATCCTATT
TCTACCTTCAGTACCTATTCGTGTAATCCTTTTATTTTATTCCTGCAAGC
TTCCTTTCTAATCACCTTGAGTATCTTCTCTCTGATATGCCCTCTCTTTT
TCCTCCCTTTCTTTTTTTTTCCCCCTTTTTCTCTTTCTTCTCTTTTTTTC
TCCACCTCTTAGTACCTTTTCGCCCCTTTTACCTTTCTCTTTTTCTTCGT
TATTTTTCCTGCTCTCTTATCGGTTGGCGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
GCAAAATATCTGAATGACAATAAGGAAGGGAGAAAAGGGACCTAGCTGGT
GACTATCCCGATGCCCTTGAACACAACTGATTAAGGGTGCCCTTTGCACC
TGCTGTGGTGTTACCATGATACATTGTTGCCTAGAAAACCACTGAATTAA
GTATGAAAGTACTGACTATCTGCAATGTAACTGGAACTCTTTATAGCCAG
GGTGTTCTTGCACAGCGCACAACCTTCCCAACCATGCATGAAAACCCTGA
GACATTTTTTTTATCTTATACCTCTGTTGTGTGTTATTGATTTTTACTTA
ATGCATGTTTTACCATTTGTAGTTTGCAAAGCACCACACTCATAGTACTA
TAGACTGGTGAAAGGCGATCCTAATACCCAGCATGATCATCTCTGTGATG
ATAAGCCTAAATCAAATATTTCAATATAAGTAGAGGCTCAGGGGCTTGTT
TACAGTTTATATTTTCTTACATTTGCTGAGTGGTTCATCCTCCCTCGCTT
AACTCTTTCTCTCCCTCTTATTGTATCCCTACATTTAACAGTTTACTTTC
TAATGACATACCCTTATCCAGTTGCCAAATCCTGTGGATAATAATATCTA
TCTTTTTTATTTATATGTACTCTTGCTTATTTTTTTACTTCTCCCAATAT
TTATTGCTTTCTCCTATTGAAATTTTCAAATAATTACTTAACGCTCTGGC
ATTTCTGTTACCTTTTTTATTTTTACCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_k07.b1 MSMg01no369_k07.b1 CHROMAT_FILE:
MSMg01no369_k07.b1 PHD_FILE: MSMg01no369_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:25 2005
         (371 letters)



>mm_chr1_187404455_187405225
          Length = 771

 Score =  634 bits (328), Expect = 0.0
 Identities = 358/368 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatatgtataccagttagcctcaagatcagagatcaacctattcctgcctttc 63
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaactcaatatgtagaccagttagcctcaagatcagagatcaacctattcctgcctttc 263

                                                                       
Query: 64  aagtgcaggggctaaaggtatgcactatcatgcccagcctactttattttcagggaacca 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 aagtgcaggggctaaaggtatgcactatcatgcccagcctactttgttttcagggaacca 323

                                                                       
Query: 124 gctctgtttcactgggactttgtatttatatacattaagtacattttaatcttttttaaa 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctctgtttcactggggctttgtatttatatacattaagtacattttaatcttttttaaa 383

                                                                       
Query: 184 cttgaaacaacatcttgcatcttattaaataataatacaatgaaactaggaaccaacacc 243
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 384 cttgaaacaacatcttgcatcctattaaattataatacaatgaaactaggaaccaacacc 443

                                                                       
Query: 244 aagaaaaattgtctaaacggtaaatctgtgtggagagcagccagggcatgttcacaggag 303
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 aagaaaaattgtctaaacggtaaatctgtgtggagagcagccagggcgtgttcacaggag 503

                                                                       
Query: 304 ggtgagccactgatgccagggtgaggctaaattcacggaatcaaaagataatgaaagcac 363
           || |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 ggcgagccactgaggccagggtgaggctaaattcaccgaatcaaaagataatgaaagcac 563

                   
Query: 364 agcatgtc 371
           ||||||||
Sbjct: 564 agcatgtc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_k07.g1 MSMg01no369_k07.g1 CHROMAT_FILE:
MSMg01no369_k07.g1 PHD_FILE: MSMg01no369_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:26 2005
         (239 letters)



>mm_chr1_187588868_187589506
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcccttgaacacaactgattaagggtgccctttgcacctgctgtggtgttaccatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atgcccttgaacacaactgattaagggtgccctttgcacctgctgtggtgttaccatgat 247

                                                                       
Query: 61  acattgttgcctagaaaaccactgaattaagtatgaaagtactgactatctgcaatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acattgttgcctagaaaaccactgaattaagtatgaaagtactgactatctgcaatgtaa 187

                                                                       
Query: 121 ctggaactctttatagccagggtgttcttgcacagcgcacaaccttcccaaccatgcatg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctggaactctttagagccagggtgttcttgcacagcgcacaaccttcccaaccatgcatg 127

                                                                    
Query: 181 aaaaccctgagacattttttttatcttatacctctgttgtgtgttattgatttttac 237
           |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aaaaccctaagacattttgtttatcttatacctctgttgtgtgttattgatttttac 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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