Query= MSMg01no369_m20.b1 MSMg01no369_m20.b1 CHROMAT_FILE:
MSMg01no369_m20.b1 PHD_FILE: MSMg01no369_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:38 2005
(289 letters)
>mm_chr1_121808413_121809096
Length = 684
Score = 472 bits (244), Expect = e-137
Identities = 276/290 (95%), Gaps = 11/290 (3%)
Strand = Plus / Plus
Query: 1 tcagtctaagaaaaaaaaaattcatacttacttgagagcccataccacaacagtttattt 60
|||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct: 201 tcagtctaagaaaaaaaaaa-tcatactt-c---agagcccataccacaacagtttattt 255
Query: 61 ccggctgtgaaaagggatgcagctggacaggtttattggccaaaaccacaagtggcagtg 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccagctgtgaaaagggatgcagctggacaggtttattggccaaaaccacaagtggcagtg 315
Query: 121 tcacatgctgactagtgtccctacttccaccaagctcccatggttgagccacatttccat 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcacatgctgcctagtgtccctacttccaccaagctcccatggttgagccacatttccat 375
Query: 181 tatcttacgaggtggctgtatttggagcttcggtctatcattgaaatagaaacggaaggt 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 376 tatcttacgaggtggctgtatttggagcttcggcctatcattgaaatagaaacggaaggt 435
Query: 241 tcgtgggat-gttt--atactcagatctcactgctttcgagctcagatcc 287
||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 436 tcgtgggatag---caatactcagatctcactgctttcgagctcagatcc 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 684
Length adjustment: 9
Effective length of query: 280
Effective length of database: 675
Effective search space: 189000
Effective search space used: 189000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_m20.g1 MSMg01no369_m20.g1 CHROMAT_FILE:
MSMg01no369_m20.g1 PHD_FILE: MSMg01no369_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:38 2005
(437 letters)
>mm_chr1_121963782_121964618
Length = 837
Score = 799 bits (413), Expect = 0.0
Identities = 431/437 (98%)
Strand = Plus / Minus
Query: 1 actgcctccttcctcttcttcctcaatgccgccagcggccttcacatcaacagcctcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 actgcctccttcctcttcttcctcaatgccgccagcggccttcacatcaacagcctcact 578
Query: 61 cagccctgggaccctccagcagggaccctggcttacagaaagcgaggttatgatgggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cagccctgggaccctccagcagggaccctggcttacagaaagcgaggttatgatgggact 518
Query: 121 tctctgatataggacctctggctgagattgaataggacaaccaatgaccttgacactgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctctgatataggacctctggctgagattgaataggacaaccaatgaccttgacactgcc 458
Query: 181 tcttaggcacttagctctagcaatgccctgggagtctcttcagctgagctccagggcaaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 457 tcttaggcacttagctctagcaatgccctggaagtctcttcagctgagctccagggcaaa 398
Query: 241 ggtttaagggtgcctctgtacgacggcacagtgagctggataggttagtcatgctattaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggcagaagggtgcctctgtacgacggcacagtgagctggataggttagtcatgctattaa 338
Query: 301 aatctcaatttgaaagtaaggagagtatcctaaaatgccctcctacggtgttttcttccc 360
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 337 aatctcaatttgaaagtaaggagagtatcctaaaatgtcttcctacggtgttttcttccc 278
Query: 361 tgactggaatagggtttgaaagagaccaaaagtcagttccagaatggctgcccagctacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgactggaatagggtttgaaagagaccaaaagtcagttccagaatggctgcccagctacg 218
Query: 421 tagggctcatgcctgtt 437
|||||||||||||||||
Sbjct: 217 tagggctcatgcctgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
