BAC Information

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BAC

Clone NameMSMg01-370C16
Chromosome1 (Build37)
Map Location 50,733,494 - 50,733,890
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C16.T7 (MSMg01no370_c16.b1)MSMg01-370C16.TJ (MSMg01no370_c16.g1)
ACCAG476978AG476979
length762794
length of high quality
(start - end)		495 (37 - 531)389 (69 - 457)
definitionCHROMAT_FILE: MSMg01no370_c16.b1 PHD_FILE: MSMg01no370_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005CHROMAT_FILE: MSMg01no370_c16.g1 PHD_FILE: MSMg01no370_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TTTTTAATAGCTGATAGTACAACATTGTGTGAATGTACCACATTTTTTGT
ATCCATTATCTATTGAAGGACATCTAGGTTCTTTCCAGCTCCTGCTATGA
ACATAGTGGAGCATGAGTCCTTTTTACATGTTTGAGCATCTTCTGGGTAT
ATGCCCAGGAGTAGTATAACTGGGTCCTCAGGTAATACTATGTCCAATTT
TCTGAGGAACCACCAAACTGATTTCCAGAGTGGATGCACCAGCATACATT
TCCACCAAGAATGGAGGAGTGCTCCTCTTTCTCCACATCCTCATCAGCAT
CTGCTGTCAACTGAGTTTTTGATCTTAGCCGTTCTGACTTGTATAAGGTG
GAATCTCAATGTTGTTTTGATTTGCATTTCCCTGATCCTAAGGATTTTAA
TCATTTCTTTAGGTGCTTCTTGGCCATTTGATATTCCTCAGCTGAGAATT
CTTTGTTTAGCTCTGTACCCCATCTTTTAATAGGATTATTTGGTTCTCTG
AAGACTAAATTCTTGAGCTCTTTGTATGTATTGTAGATAAATCCTCTACT
ACATGGAGGATTGGTCAAAATTTTTCCTCTTCTGTTGGGTATCTGGCTTA
TAGAAATGTTCCTTGCTTTTTACAATTCCCTCTTTTTTCTGCCCACATCT
TTTTTTCTTCTTCTTCATCTTTCTTCCCTTGGTTTCCTTCCTACCATTCC
TTATAGCCTTTG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACTTTCCTGTTTATGAAATATGTAAAGAAAA
ATACATGTCTCTGCCCATGTCTATAACATATATTCAGTGAGAGCCGCAGC
TGAAATTTCATCCTTATTATGCTGATATGCTTATTTGGATGCCCTATATT
CAATGATTTCATTCAACTGGTGAATGTGGGTAAATATTTGAATTTTATCC
AACATTTAATCTCAGGACTCAGTTTAAACTCTGTCAAGAAAATACAGTAT
GCTGAATGCAGATCATTTTTAGTACAATTTTGTACAAAATTTCTTATTAA
AGATATGGGCAAGTTGCAAAAAAAATCTTAAGTGTGATCCTATAAGTTTA
GGGCTTACCTATGAAGCTTATTCTTCTGGGAAACTGGGTTTAGCTGCTAG
AAATTACATAGAANAAAATTACCAAGAAGCATGGTCTAGGCCTTTTTAGA
AGACCAGAACAGACACTACCGCTGGTCCCATAAAGGCTTGCTGAAAGGAG
ATAACCGACCTCTGAGAAGTTCTGCCCGAACCCTACAAATAAAAAAGGCT
AAGGTTTATAGCCCCCCTTATAATTTTTTTTAGGCCCCCTGGGTAAATAC
TAAAAAAGACCCTGCTTTTCCGGGTATTTTTCCCCTTTTCCCTTAAAACT
CTTTATCTCTTCCATCCCCCTCCTTCTCGGGCTATATCCTCTCTTCTACA
CTATTTTCTTCTCCTCCCTTCCCCCTCTTTTTTCCCTCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c16.g1 MSMg01no370_c16.g1 CHROMAT_FILE:
MSMg01no370_c16.g1 PHD_FILE: MSMg01no370_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:07 2005
         (389 letters)



>mm_chr1_50733294_50734090
          Length = 797

 Score =  683 bits (353), Expect = 0.0
 Identities = 384/397 (96%), Gaps = 8/397 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactttcctgtttatgaaatatgtaaagaa-aaatacatgtctctgcccatgtctataac 59
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 597 tactttcctgtttatgaaatatataaagaagaaatacatgtctctgcccatgtctataac 538

                                                                       
Query: 60  atatattcagtgagagccgcagctgaaatttcatccttattatgctgatatgcttatttg 119
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 537 atatattcagtgagagctgcagctgaattttcatccttattatgctgatatgcttatttg 478

                                                                       
Query: 120 gatgccctatattcaatgatttcattcaactggtg-----aatgtgggtaaatatttgaa 174
           |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||
Sbjct: 477 gatgccctatattcaatgatttcattcaactggtgaatgcaatgtgggtaaatatttgaa 418

                                                                       
Query: 175 ttttatccaacatttaatctcaggactcagtttaaactctgtcaag-aaaatacagtatg 233
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 417 ttttatccaacatttaatctcaggactcagtttaaactctgtcaagaaaaatacagtatg 358

                                                                       
Query: 234 ctgaatgcagatca-tttttagtacaattttgtacaaaatttcttattaaagatatgggc 292
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgaatgcagatcattttttagtacaattttgtacaaaatttcttattaaagatatgggc 298

                                                                       
Query: 293 aagttgcaaaaaaaatcttaagtgtgatcctataagtttagggcttacctatgaagctta 352
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 297 aagttgaaaaaaaaatcttaagtgtgattctataagtttagggcttacctatgaagctta 238

                                                
Query: 353 ttcttctgggaaactgggtttagctgctagaaattac 389
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttcttctgggaaactgggtttagctgctagaaattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 797
Length adjustment: 9
Effective length of query: 380
Effective length of database: 788
Effective search space:   299440
Effective search space used:   299440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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