BAC Information

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BAC

Clone NameMSMg01-370M05
Chromosome1 (Build37)
Map Location 25,995,918 - 25,996,280
singlet/doubletsinglet
Overlap genenone
Upstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370M05.T7 (MSMg01no370_m05.b1)MSMg01-370M05.TJ (MSMg01no370_m05.g1)
ACCAG477433AG477434
length769896
length of high quality
(start - end)
380 (40 - 419)---
definitionCHROMAT_FILE: MSMg01no370_m05.b1 PHD_FILE: MSMg01no370_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:55 2005CHROMAT_FILE: MSMg01no370_m05.g1 PHD_FILE: MSMg01no370_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CATTTATGTGTAAAAGTAAAAAGATATAGTAGGGTTAAAGTATGTCACTA
TGAAAAATCATATATATAAGATATATTTCTTAAATACAATATTGTTTCTT
AAATATTTCTGGGTAATAAAATGAATACATAAACTTTTAATAATAAAGTT
TATCTGGCTAGAATTTTTGCCATGTTGATGCAACGTACAGACACCTGTAA
AGAGAAAGGACCAATTAAGGCATTCTCTGAGAACAGATTGGCTCCCAGCC
AAATCTGTGGGAAAATTGTCTTAATTGTTGATTGATATGGGAGAGCCCAT
GCCACTGGGTGGTATCACTATGAACAGGTTAACTGTTGAAAATTTGCCAA
ATGAATTAGACAGCAATGTTGACAATTGAAAACAATACTTTACCCTGACC
AATTACCCAAACAATGATCATCTCTCTCCCTCTTATTTTTGTATTAAATA
TTTTAGAATATTTACATATGAACACTTACAAATATTCCTTGTGGACATAT
TTAACTTCCCCTCCCTAATTTATTTTCCTCCGAAAATAGCTTAAGCATTA
CAGATCTAACTCTCGAGCTTATCAAGGGCCGTTTATTATTCTGCGACACG
AATCCTTCCTATTATTCCAACTAACCTGATTTACCCTTCTTCTCTCGTAC
ACACTGTTCCTATTCACTCATCTTGTCTCCCCCTCCATTGCTCCTCATCC
TCTTTTCCGTTACCTTATN
TCTGCTGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGTCTTCTAGAACAGAGAGAATGAGAGAA
CAAGAGAGCATTCAGTAGACCCCGCACAGAGGGGGGAGGTTTTTTTTTTT
TTCTTTCCTCTTTTCCCCTTCCCCTCTTCTCTCTCCCTTTTTTTTCTCCT
TCTTTTCCCTCTCCCCCTCCCCCCTCCCTCCTTTCCCCCCTTTTTCCCTT
TTCTCCTTTTCCTTTTCCCCTTTTTCCCTTTTCCTCCTCTTTTCTTCTCC
TTTCCCCCCCTCTTTCTCTCTTCTCCCTTCCCCCCCTTCCTTTTTTTTTT
TTCTCTTCTTTCTCTTTTTCTTTTCCCCCTTCCTTCTTTCTTTCTTTTCT
CTTTCCTCCCCTCTCTTCTCTCTCTTTTTTTTTCCTCCCCTCTCTCTCTC
CTCCCTCCTTCTTTTTTCCCCCTTTCTTTCTTCTTCTTTTCCCTCCCTCT
TTTCCCCTCTTTTTCCCCCCCCCCCCCCTCTCTCTTCTCCTTTTTCTTTC
TCCCCCCCCTTTTTCTTTTTTTTCCCCTTTCCCTTCTTCTCTCCTCCTTC
CTCTCTTTCCTCTTTTTCCCCTTCCTCCTCCCTTCTCCTTCCTTTTTTCC
TCCCCCTTTCTTTCTCCCCCCTTTCTCCCCTCTTCTTTCTTTCCTCCCCT
CCCCTCTTTTCTCCCCCTCCCCTCTCTCCCTCTTTCCTCCCCCTTTCTTT
CTCTTTTCTCCCCCTTCCTCTTCTCCTCCTTCTTTCCCCCTTTTCTCCCT
TCTTTCCCCCCCTTCCCCCTTTTTCCTCTCTCTTTCTCTCCCCCCCCCCC
CCCTTTTCTTTCTTTTTCCCCTTTCCCCTCTCTTCTCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_m05.b1 MSMg01no370_m05.b1 CHROMAT_FILE:
MSMg01no370_m05.b1 PHD_FILE: MSMg01no370_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:55 2005
         (380 letters)



>mm_chr1_25995917_25996696
          Length = 780

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatttatgtgtaaaagtaaaaagatatagtagggttaaagtatgtcactatgaaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattcatttatgtgtaaaagtaaaaagatatagtagggttaaagtatgtcactatgaaa 305

                                                                       
Query: 67  aatcatatatataagatatatttcttaaatacaatattgtttcttaaatatttctgggta 126
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aatcatatatagaagatatatttcttaaatacaatattgtttcttaaatatttctgggta 245

                                                                       
Query: 127 ataaaatgaatacataaacttttaataataaagtttatctggctagaatttttgccatgt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ataaaatgaatacataaacttttaataataaagtttatctggctagaatttttgccatgt 185

                                                                       
Query: 187 tgatgcaacgtacagacacctgtaaagagaaaggaccaattaaggcattctctgagaaca 246
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tgatgcaatgtacagacacctgtaaagagaaaggaccaattaaggcattctctgagaaca 125

                                                                       
Query: 247 gattggctcccagccaaatctgtgggaaaattgtcttaattgttgattgatatgggagag 306
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 124 gattggctcccagccaaatctgtgggaaaattgttttaattgttgattgatatgggagag 65

                                                                       
Query: 307 cccatgccactgggtggtatcactatgaacaggttaactgttgaaaatttgccaaatgaa 366
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 64  cccatgccactgggtggtatcagtataaacaggttaactgttgaaaatttgccaaatgaa 5

              
Query: 367 tta 369
           |||
Sbjct: 4   tta 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)