BAC Information

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BAC

Clone NameMSMg01-370N07
Chromosome1 (Build37)
Map Location 178,524,523 - 178,524,866
singlet/doubletsinglet
Overlap genenone
Upstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370N07.T7 (MSMg01no370_n07.b1)MSMg01-370N07.TJ (MSMg01no370_n07.g1)
ACCAG477483AG477484
length790784
length of high quality
(start - end)
384 (41 - 424)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no370_n07.b1 PHD_FILE: MSMg01no370_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:00 2005CHROMAT_FILE: MSMg01no370_n07.g1 PHD_FILE: MSMg01no370_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTTCCCAGCATCCATATAAGTCATCTCACATTGTTTGTAGCTCCTGTTC
CAACAGCCTCTTCTGCTTTGCATGGGTACCTGCACTCACATGCACATATA
ACACAGACATGAGCATCATACACATAAGACAAATCTTAAATCAGTGAGTC
TAACTCTATGACTCTACTTTTATCTTAATCATTATTATTAAAACTATTTT
TAATTTTTAAATATGTGTTGGGGGCTTTTAGCTTTTATTTTGATTTCCAA
TACATTTGAGATTCTTGGCTTTAATAATGTTAAAGCATGTTTTATTTGTT
GGGTTGTGTAGTATATTAATTTTTTTCAATGTGGCAAAATGCCTGACAGA
AGCAACTTAATGGAGAGAGTGCTAATCTGGCTCACAGTTTTAGGATTACC
GTCTTTTATGGCAGAGAAAGCATGGTGGCTAGAGCAATCACCGCGTGGGC
CTACTATTTGTTGCTGCAGCTCATTTACCTCCACATGATCATTAACCACA
ATTCCTGTATTCTTACCTTGATACTGATGGTTCCCTTCCCTGGCCATTTC
TCTTCTTTTTCTTGTACCCACATACGCCCTGATCTCTCACTCACTTTCTT
CTCATCCCACCATTTTCTCCCTCTCTTGTACCCCTACATCCTAAATTCCT
ATGTATCCTATGTGGTCTTCTCCCCCAGTTCTACCTGACCCTTTGTACAC
CCACTTCTCTTTCTCCCTCTTTTTCCCATTACCTCTAACN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCTTCCTTAGCTAGGTGCATGAGCAT
CTGGTATAGATGCTCCTTTGCAACGACAGGTTGGGTGAGAAGATGTCTGA
ACCCTCTTCTCACAGATGCTCTGTGATCCCATGAGTCGGTTGTATCTCCA
TGCAGGCCTGGACATGATAGTAGCAATGTTCCTGGTGTGCTTTAAGGAAG
GATGGCACAGATGGCTGCAGGCAGTAATTTGTCTTGAACTTGCAGCTGTC
TCCCCTGGATCAGGCTCATGATGTTCCTAAATCATCACAGCCTCATTTGA
GAGCCCCATTTAGGCTGAGAGCATTGGACTCTCATTCCTAGCAGCCTTCT
GATTTATATTTCCTGGGGCATTGTTTCATTTTCTTTACCAATAATGTGAA
CAACATAATTCAGAACAGATGCCATAATCTGGTGAATTTCTTTCTGACTG
CCATTCTTCCTTACATTACACCTGGTCTTTATAAATTACCTCCCTGCTAT
TATTTGTATCCTCCTTAGTCCCATTTATTTATCTCATCCATAACTCCATA
ACCTTCCACTGCTTGTCATTCCATATTTTCCCCTGTTTTTCTCCTCTTAC
CTCCATTTCCTTGCTCCCCATTACCCATTCCTTCTTTTTTCTTTTCTTCT
TCTCCCCCTTCTCTTTTTTCTCTCTCCTTCCCTTTTTATTTCCCCTCCCT
TTTAATCTTACTCTTCTCTCTTTCTTCCTACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_n07.g1 MSMg01no370_n07.g1 CHROMAT_FILE:
MSMg01no370_n07.g1 PHD_FILE: MSMg01no370_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:00 2005
         (344 letters)



>mm_chr1_178524323_178525066
          Length = 744

 Score =  627 bits (324), Expect = 0.0
 Identities = 339/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccttccttagctaggtgcatgagcatctggtatagatgctcctttgcaacgacaggtt 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 544 acccttccttagctaggtgcatgagcatctgacatagatgctcctttgcaacgacaggtt 485

                                                                       
Query: 61  gggtgagaagatgtctgaaccctcttctcacagatgctctgtgatcccatgagtcggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gggtgagaagatgtctgaaccctcttctcacagatgctctgtgatcccatgagtcggttg 425

                                                                       
Query: 121 tatctccatgcaggcctggacatgatagtagcaatgttcctggtgtgctttaaggaagga 180
           |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 424 tatctccatggaggcctggaaatgctagtagcaatgttcctggtgtgctttaaggaagga 365

                                                                       
Query: 181 tggcacagatggctgcaggcagtaatttgtcttgaacttgcagctgtctcccctggatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggcacagatggctgcaggcagtaatttgtcttgaacttgcagctgtctcccctggatca 305

                                                                       
Query: 241 ggctcatgatgttcctaaatcatcacagcctcatttgagagccccatttaggctgagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggctcatgatgttcctaaatcatcacagcctcatttgagagccccatttaggctgagagc 245

                                                       
Query: 301 attggactctcattcctagcagccttctgatttatatttcctgg 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 attggactctcattcctagcagccttctgatttatatttcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)