BAC Information

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BAC

Clone NameMSMg01-370O21
Chromosome1 (Build37)
Map Location 166,708,540 - 166,708,914
singlet/doubletsinglet
Overlap genenone
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370O21.T7 (MSMg01no370_o21.b1)MSMg01-370O21.TJ (MSMg01no370_o21.g1)
ACCAG477559AG477560
length772787
length of high quality
(start - end)
379 (37 - 415)220 (67 - 286)
definitionCHROMAT_FILE: MSMg01no370_o21.b1 PHD_FILE: MSMg01no370_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:08 2005CHROMAT_FILE: MSMg01no370_o21.g1 PHD_FILE: MSMg01no370_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTC
TTAATTCTCTCAGAATTTTCTCCATATCAAGGACAAATCTTAGGCTGTTT
AATACAGCTAGTGTGTCTGAAAAGACTTCTGAAGAGAGGCTGGCTCAGCT
CACAATCCTGAAATGGAGTGTGCTATGGTGTCTCCATGGAGAGATGTGAC
AAGAGTACCAAGTTATATATGGCAGAGTATATGAAGATGGCTGTCTTAGT
CAGGGTTTCTATTCTTGTACAAACATCAGGACCAATAAATAAGCTGGGGA
GGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAG
GAAGTCAGGACTGGAACTCACATAGGTCAGTGGAAGAATGTTACTTCCTG
GCTTGCTTCCCCTTGCTTGCTCAGCTTGTTTTCTTATAGAACCCAAGACT
ACCAGTCCTGGAATGGCTTCACCCACAAAGCGCCCTCTCAGATTGATCAC
TATTTGATAAAATGCCCCTCAGCTGTATCTCATGCATGCATTTCCTTTCC
CTGTGACTCCTCCCCCTTGTATTATGTTCTCCCTTCATTCCCCTCCACTT
CAATTGTCATTCCTCCACTTGTTATCATCATCCCATCTTTTCCCCCTCTT
TTTTACCAAATTTTTACGTACCCTTTTTTTCTCCTTCTTTTATCTACATC
ACTTTCTCTTTACTCTTTTTTTTTTCCTCCCGTTCTGTTCCTTCTTCTTC
CTCTTCTTTCCCCCTCCCTTTC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACACATTCAGGAACCCCAGAGAAATGCTAAGCTA
GAAGCCATAATATTATGCAGAAGACATGATGCAGACCTGCGCAGGCCCTG
TGCATGCCCCCTCAGTCTCCGTGAATTCACATGAGCTTTGATCATGTTGA
TTTAGAAGGCCTTGTTTTCTTGGGGTCCTCTATCCTGTTTGGCTCTTACA
CTCTTTCTGTCTTCTGCTCTATGGGGTTCCCTGAGTCCTGAGGGGAGAGG
TCTTCCATATCACAGATTTGTCTCTATACATCAGTATATATTCCTTGACT
ATTGATAGCCGTCTTCCTCTTTACGTCACCTTTACTACTTTTTTTCTTCC
CTCCGCTCCCTATTTCACAATATTCGCTCTTTTTCTTCTTTCCCCCCCTT
ATCCATATTTTCCGTATTTCTTTTTGTAACCTTCTTACTCGCCCCTTTTT
TTTATCCCCCTTCCGCTCTTTTCCTTTTGTCTCTTTTTCTTTTTTCTTTT
ATCCTCCTCCCTTCTTTTTCCCCCTTCCTTTCCTCTCTCTCTTCTCCCTT
CTTCTTTCCCTTCCCCTTTTTTCCTCTATTCCTTATCCTCTTATCCCTCT
TTTATTTCCGTTCCCCCCTTTTTTCTCCTATATATCTCCCTATCTTTTTT
TTTTACCCCTTCCCTCTTTTCTTCCTTATTCTTTCCCCTCCCCTCTCCTT
CTTTTTTCTTCACCATCCGCCCTCTTCTCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_o21.b1 MSMg01no370_o21.b1 CHROMAT_FILE:
MSMg01no370_o21.b1 PHD_FILE: MSMg01no370_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:08 2005
         (379 letters)



>mm_chr1_166708336_166709114
          Length = 779

 Score =  717 bits (371), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcttaattctctcagaattttctccatatcaaggacaaatcttaggctgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttaattctctcagaattttctccatatcaaggacaaatcttaggctgttt 264

                                                                       
Query: 65  aatacagctagtgtgtctgaaaagacttctgaagagaggctggctcagctcacaatcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatacagctagtgtgtctgaaaagacttctgaagagaggctggctcagctcacaatcctg 324

                                                                       
Query: 125 aaatggagtgtgctatggtgtctccatggagagatgtgacaagagtaccaagttatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatggagtgtgctatggtgtctccatggagagatgtgacaagagtaccaagttatatat 384

                                                                       
Query: 185 ggcagagtatatgaagatggctgtcttagtcagggtttctattcttgtacaaacatcagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagagtatatgaagatggctgtcttagtcagggtttctattcttgtacaaacatcagg 444

                                                                       
Query: 245 accaataaataagctggggaggaaagggtttattcagcttacacttccacattgctgttc 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accaagaaataagctggggaggaaagggtttattcagcttacacttccacattgctgttc 504

                                                                       
Query: 305 atcaccaaaggaagtcaggactggaactcacataggtcagtggaagaatgttacttcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcaccaaaggaagtcaggactggaactcacataggtcagtggaagaatgttacttcctg 564

                          
Query: 365 gcttgcttccccttg 379
           |||||||||||||||
Sbjct: 565 gcttgcttccccttg 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)