BAC Information

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BAC

Clone NameMSMg01-370P10
Chromosome1 (Build37)
Map Location 185,925,948 - 185,926,302
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370P10.T7 (MSMg01no370_p10.b1)MSMg01-370P10.TJ (MSMg01no370_p10.g1)
ACCAG477585AG477586
length770791
length of high quality
(start - end)		490 (41 - 530)355 (71 - 425)
definitionCHROMAT_FILE: MSMg01no370_p10.b1 PHD_FILE: MSMg01no370_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:10 2005CHROMAT_FILE: MSMg01no370_p10.g1 PHD_FILE: MSMg01no370_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTTAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAATCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTATAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACTTTCACCAAAGAACT
CACCNAATATGGACTCCCTGATAAATGGAAATTATTCCAAAACCCAGGAT
ACCCCGGAAATAAATACCATTTCCTTAACTCTGGAAACCTAAAAAAATAT
AAATGAGGGGGGACCTATGCCCCTCCCTTAAAAAGGGAAAAAACCCCTTG
GAGGAGTTTTTTACCCATTG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTCTTCTTTCCAGTGGTCTATGTCAGGT
ATTTCTGTGACAGCAGTACGATAGTCACCAATGTGGCAATCATTCCTAAG
AGTTAAATCTCAAGTTTAGAGATAGTGGGTTGAAGAAGAGTCAGATGAAT
TTTATCTACTATACTAATGGAACATTGGATCCCGAGACAGGTCTCTGCGC
AGAAGTGAGTTTTCAGATGCTTCAGTTGGTCCGCACTACTGCTGGCTCGA
CTCTGCCCATCTCAATGTACTCTGGCAGCTGCATGGTGGAGTTGTTTTGA
ATGAGTCCCTGGTCTCCCAGAAGTCTGTGGAAACATAGGCTTTGTTTCCC
ATCCTGCCACACAACGGTAGTATGGGAAATTTCTCAAGCCTTAGGAAGAC
AAAGAACTTGATTGCTAACTTCACATTTGCCCTCAATACTGGATCTTTAA
GGTACAACCCGTAATTTTCCCCCTTTTCTCTTTTTTGCCACTGCTTGGAT
TACTCTCCATTGTGTTTTTTGAACTCCTCCCCTATTCACACGTGTTCTCT
TCCCTCCCCTCTCTTTGTCTTCCCTCTCCCCTATTTACTCTCCTCCCCCT
TTCTTCCGCTCCTTTCTTTTTTTCCTCTTTATCCCTATTTCTCGCTTTCC
TTTTCCTTCTATTTTCCCCTTCTTTTCCCCTTTTCCCTTCTCTTTATTCT
TTAGCGCTTTCTCTATTTTTATTCTCGTTTTCCCCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_p10.g1 MSMg01no370_p10.g1 CHROMAT_FILE:
MSMg01no370_p10.g1 PHD_FILE: MSMg01no370_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:11 2005
         (355 letters)



>mm_chr1_185925748_185926502
          Length = 755

 Score =  625 bits (323), Expect = 0.0
 Identities = 347/355 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcttctttccagtggtctatgtcaggtatttctgtgacagcagtacgatagtcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcttctttccagtggtctatgtcaggtatttctgtgacagcagtacgatagtcacca 260

                                                                       
Query: 61  atgtggcaatcattcctaagagttaaatctcaagtttagagatagtgggttgaagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtggcaatcattcctaagagttaaatctcaagtttagagatagtgggttgaagaagag 320

                                                                       
Query: 121 tcagatgaattttatctactatactaatggaacattggatcccgagacaggtctctgcgc 180
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 321 tcagatgaattttatctactatactaatggaacattagaccccgagacaggtctctgcgc 380

                                                                       
Query: 181 agaagtgagttttcagatgcttcagttggtccgcactactgctggctcgactctgcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagtgagttttcagatgcttcagttggtccgcactactgctggctcgactctgcccat 440

                                                                       
Query: 241 ctcaatgtactctggcagctgcatggtggagttgttttgaatgagtccctggtctcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaatgtactctggcagctgcatggtggagttgttttgaatgagtccctggtctcccag 500

                                                                  
Query: 301 aagtctgtggaaacataggctttgtttcccatcctgccacacaacggtagtatgg 355
           ||||||||||||||||||| ||||||||| ||||||| | | || ||||||||||
Sbjct: 501 aagtctgtggaaacataggttttgtttcctatcctgcaagagaagggtagtatgg 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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