BAC Information

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BAC

Clone NameMSMg01-371A09
Chromosome1 (Build37)
Map Location 24,230,779 - 24,231,271
singlet/doubletsinglet
Overlap geneCol9a1
Upstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808
Downstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371A09.T7 (MSMg01no371_a09.b1)MSMg01-371A09.TJ (MSMg01no371_a09.g1)
ACCAG477631AG477632
length764763
length of high quality
(start - end)		492 (75 - 566)579 (43 - 621)
definitionCHROMAT_FILE: MSMg01no371_a09.b1 PHD_FILE: MSMg01no371_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:16 2005CHROMAT_FILE: MSMg01no371_a09.g1 PHD_FILE: MSMg01no371_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAACAAGTCATTTAAAACAACAGG
CCAAAGAAGTAAAACAAACACGATAAAACAGAGCTTTTCTTTAGAGTAAA
CTAGATAAAACTTGATAAAGCAGAAGTTGAGGCTGGGAGGTGGTGCTGTC
TGGGAAGCGCTTGCCTGAGTTGGATCCCTAGAACCCCTGTGAAAGGCCCG
GTGTAGAAGTGTGTGCCTACCATCCTAGAAGGATGCTTTCACTTCAGCTA
ACAGTCAGCTTAGCCTACAGGGTGAGTTTGACAAATTCCAGGCCAATGCC
AACTCCGTCTCAATAAACACAAATGTGGAGGAATACACTCTGGCCTTCAC
ACACACCCAGTGGCACTCACATCCCACACATACCTGTACATGCACACACG
TGTGAACATGTGATCACAGGTGTATACAAACACATAGGCAAGAAAGAGAG
GCTGTATTCTCCCAGGTTCTCACCATGCAACCAGGAGCTGAATGCTGTTT
ACTANAAGCATCGCCTGGTGTGCATAAGGAATGGTGATGACTATACTCAC
TGTCTGAATTATTCTAAATGTTGGCTTTTGCCTTTAGGGAAACATGGGTG
CCCCCGGAAAGCCCGGCCCGTTGGGAAGTTCCGGAAACCACCAAGACAAT
GTTAAGCTGTTCTGGCCTTAAAAATGGAGCCCCCCCAAAAATTGGCCCTT
GATCCCCGCTTTCC

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGTTCTGAGCCCCATTTTTAAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
TGGATTTAGGATAGGTAAAGATCCTTTCCCAATCTATTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCTATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCATTCGCATTCT
TCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCG
TAGTTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGTAAAGCTTTATGTCAGGCGTGGTGATTCCACCAGAAAATCTTTTATTC
TTGAGAAGACTTTTTGCTATCCGTGGGTTTTTGTTTTTCCAGATGAAATC
TCCAATTGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_a09.b1 MSMg01no371_a09.b1 CHROMAT_FILE:
MSMg01no371_a09.b1 PHD_FILE: MSMg01no371_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:16 2005
         (492 letters)



>mm_chr1_24230580_24231471
          Length = 892

 Score =  924 bits (478), Expect = 0.0
 Identities = 489/493 (99%), Gaps = 1/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaacaagtcatttaaaacaacaggccaaagaagtaaaacaaacacgataaaacagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aagaacaagtcatttaaaacaacaggccaaagaagtaaaacaaacacgataaaacagagc 259

                                                                       
Query: 61  ttttctttagagtaaactagataaaacttgataaagcagaagttgaggctgggaggtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttctttagagtaaactagataaaacttgataaagcagaagttgaggctgggaggtggt 319

                                                                       
Query: 121 gctgtctgggaagcgcttgcctgagttggatccctagaacccctgtgaaaggcccggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctgtctgggaagcgcttgcctgagttggatccctagaacccctgtgaaaggcccggtgt 379

                                                                       
Query: 181 agaagtgtgtgcctaccatcctagaaggatgctttcacttcagctaacagtcagcttagc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 agaagtgtgtgcctaccatcctagaaggatgctttcacttcagcgaacagtcagcttagc 439

                                                                       
Query: 241 ctacagggtgagtttgacaaattccaggccaatgcca-actccgtctcaataaacacaaa 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 ctacagggtgagtttgacaaattccaggccaatgccatactccgtctcaataaacacaaa 499

                                                                       
Query: 300 tgtggaggaatacactctggccttcacacacacccagtggcactcacatcccacacatac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtggaggaatacactctggccttcacacacacccagtggcactcacatcccacacatac 559

                                                                       
Query: 360 ctgtacatgcacacacgtgtgaacatgtgatcacaggtgtatacaaacacataggcaaga 419
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 ctgtacatgcacacacgtgtgaacatgtgatcacgggtgtatacaaacacataggcaaga 619

                                                                       
Query: 420 aagagaggctgtattctcccaggttctcaccatgcaaccaggagctgaatgctgtttact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagagaggctgtattctcccaggttctcaccatgcaaccaggagctgaatgctgtttact 679

                        
Query: 480 anaagcatcgcct 492
           | |||||||||||
Sbjct: 680 agaagcatcgcct 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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