Query= MSMg01no371_a13.b1 MSMg01no371_a13.b1 CHROMAT_FILE:
MSMg01no371_a13.b1 PHD_FILE: MSMg01no371_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:17 2005
(303 letters)
>mm_chr7_150192610_150193312
Length = 703
Score = 545 bits (282), Expect = e-160
Identities = 295/303 (97%), Gaps = 6/303 (1%)
Strand = Plus / Minus
Query: 1 acccagtcctgtctccagacctggctaggtatcagaaccaagcccttctggggtttttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 acccagtcctgtctccagacctggctaggtatcagaaccaagcccttctggggtttttag 598
Query: 61 agataaccccagggcagagagggccaattctctctttcaggggccctgcagcacccaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agataaccccagggcagagagggccaattctctctttcaggggccctgcagcacccaggt 538
Query: 121 agaggntttttttttttttttttttttttttttgaccggnccaggtaggagggtcctgat 180
||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 537 agagg------ttttttttttttttttttttttgactggtccaggtaggagggtcctgat 484
Query: 181 tgagcaagtggaaggtcctgactgtgtaagtggagggactcactggtctatatcccctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgagcaagtggaaggtcctgactgtgtaagtggagggactcactggtctatatcccctga 424
Query: 241 cctttgcttctttctggatacttctgctggggtcaggcagctccctggtcttattcctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctttgcttctttctggatacttctgctggggtcaggcagctccctggtcttattcctct 364
Query: 301 cca 303
|||
Sbjct: 363 cca 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_a13.g1 MSMg01no371_a13.g1 CHROMAT_FILE:
MSMg01no371_a13.g1 PHD_FILE: MSMg01no371_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:17 2005
(640 letters)
>mm_chr1_52824657_52825696
Length = 1040
Score = 493 bits (255), Expect = e-143
Identities = 541/655 (82%), Gaps = 49/655 (7%)
Strand = Plus / Plus
Query: 13 ctaagtaccatttccactgtaatgctttcccttcc-tctgtagaccag-cccatgcttcc 70
||||||||||||| ||||||| | |||| |||||| | ||||| | | |||||||||||
Sbjct: 206 ctaagtaccattttcactgtagtacttt-ccttccatgggtaga-ctgacccatgcttcc 263
Query: 71 tctggtgccttgatccaacctagggccaggatgttggttctgaatattacttgcttgttc 130
|||||||||| ||||||| ||||| ||||||| ||||||||| |||| |||| ||||||
Sbjct: 264 tctggtgcctggatccaatctaggatcaggatggtggttctgattattccttggttgttc 323
Query: 131 tgcagcatgctgtgacaagtttttaaggccttata--tcctatacaaattgttttctcaa 188
||||||||||| || |||| ||||||||||| ||| | | | ||||||| ||| ||||
Sbjct: 324 tgcagcatgctatggcaagattttaaggcctcataggt--tgtccaaattgctttatcaa 381
Query: 189 atagagagaatttg-tttcctaactatgggaagcatttacaacagaagtctact-gccat 246
|||||||||||||| ||||| ||||||||||||| ||||||| ||||| ||||| |||||
Sbjct: 382 atagagagaatttgttttcc-aactatgggaagcgtttacaatagaagcctactggccat 440
Query: 247 tctctagcatttcttttggcaaagatattccagtttc----ct------------gtatg 290
|||||| ||||||||||||||||||||||| |||||| || |||||
Sbjct: 441 tctctaccatttcttttggcaaagatattctagtttctatactgttttagggaccgtatg 500
Query: 291 tctaaatatactgtatcatc-tgctcggatg--ttgtatagcttagaatattcctttata 347
| ||||||||||||| |||| || | | ||| ||| ||| || |||||||||||||||
Sbjct: 501 tttaaatatactgtaccatcttg-ttgaatgtattg--tagtttggaatattcctttata 557
Query: 348 tactt-tagcactgttttcacagcttgttcttgggccttatccaaaatgaa--atcattt 404
|| || || |||||||| |||||||||||||||||| |||||| ||||||| || |||
Sbjct: 558 ta-ttctaacactgtttccacagcttgttcttgggctttatcccaaatgaagtat--ttt 614
Query: 405 gcatgccttttaatattatacaagggtttcagaatgacttgtaaatatggtatgtgttgt 464
|| | |||| ||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 615 gctttccttctaacattatacaaggg--------tgacttgtaaatatggtatgtgttgt 666
Query: 465 cttcaatacacaaacaatcctataagaaattgtacctcttttttattggttggtatttta 524
|| |||||| |||| ||||| |||||| |||||| || |||| ||||||| | |||||
Sbjct: 667 ctgcaatacccaaataatccaataagatgttgtac--ctgttttcttggttgttgtttta 724
Query: 525 agctgttctaacttacttatgacttctggaaatatttccggtcctgtagtggaccacata 584
|||||||||||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct: 725 agctgttctaacttacttatgacttctgtaggtatttctggccctgtagtggaccacatt 784
Query: 585 acacccaagaacttgaccttcatatatggtcctgatgccttatcattattgatgg 639
| |||||||||||||| ||| ||| |||||||||| ||||| | ||||||||||
Sbjct: 785 atacccaagaacttgatctttgtatctggtcctgataccttaaccttattgatgg 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
