BAC Information

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BAC

Clone NameMSMg01-371E20
Chromosome1 (Build37)
Map Location 14,261,560 - 14,262,010
singlet/doubletsinglet
Overlap geneEya1
Upstream geneNcoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371E20.T7 (MSMg01no371_e20.b1)MSMg01-371E20.TJ (MSMg01no371_e20.g1)
ACCAG477844AG477845
length757786
length of high quality
(start - end)		451 (75 - 525)474 (46 - 519)
definitionCHROMAT_FILE: MSMg01no371_e20.b1 PHD_FILE: MSMg01no371_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:41 2005CHROMAT_FILE: MSMg01no371_e20.g1 PHD_FILE: MSMg01no371_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCAGGAATGTTTCTGTCTTCC
CTCTGTGGGAATTAAGGACAGTTGTTCATTTGCATGATTGCCTTTAATTA
TAATTAAGACCAGTGGCCTACCTCTGTGTTGCCAGGTCTCAGTCTGGAAT
GAGTGGACCATCCTGGTGCTTGGGGAAGTATTTGAGGCCCAAAGTAAATT
ATTTTTCTGTAATTTTATAAAATATAAACTTGCATTTATTACATAACAAT
ATAAATTCAAATGTAATTTAGCCTACATTTAGAAGAATTACACTTAAATA
TTTAAAAATTAGTGGGAATAAAAGGAGCTACTGGTCACATTCACAGGTTT
CTTAATCATTCTACTGTTTTTGAGGTTGAGTTCTTTAATATTCTACTGTC
TTAATGCTTCCTTTCCAGAAAGATCTAGATCAGTGGCTCTCCACCTGTGG
GTTGCCACCCCCATGAGGGTCACATATCAGATCTTTATGTTACGGCTCAT
AAAAATAGCAACATTATAGTGATGAAGTAGCTATGAAACAGATTAAGGTT
GTTGACCCTTACCCATTAAGTACTGGTTTTAAGGTCCCAGCCTTTAGATA
GCTTAAATTCCATTGTTTTTAAAACCCGGAAGAAAGTTTCCCCTCCCCTT
TATACACCCCCCTTTGTTTGAACCTGTCGTGTTTCTCTTTTTTTATAAAG
GTTTTGT

NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAACCTGTTAAACAGCTTCAATGAAGTAGCTGGATATAAAATT
AACTCAAACAAATGAGTGGCCTTTCTCTACACAAAAGATAAACAGGCTGA
GAAAGAAATTAGAGAAACAACACCCTTCATAATAGTCACAAAAAATATAC
AATACCTTGGTGTGACTCTAACTGAGGAAGTGAAAGATCTGTATGATAAG
AACTTCAAGTCTCTAAAGAAAGAAATCAAAGAAGATCTCAGAATATGGAA
AGATCTCCCATGCTCATGGATTGGCAAGATTAATATAGTCAAGATGGCTA
TCCTGCCGAAAGTAATCTATAGACTCAATGAAATCCCCATCAAAATTACA
ACTCAATTCTTCACCGAGTTAGAAAGGGCAATTTACAAATTCATCTGGAA
TAACAAAAAACCTAGGATAGCCAAAACTATTCTCAACAATAAAAGAACCT
TTGGTAGAACCACCATCCCTGGGCCTCAGCTTTACTACAGAGTAATTGTG
ATAAAAACTGCATGGTACTGGTACAGGCACAGAGAGGGAGAATAATGGAA
TAGAATTGAGGACCCCGAAAATAACTCCCATACTTCGGCCCCTTGATCTT
TGGCCAAGGAGGTTAAACCGGGCCGGGAGAAAAAGAAAGGATTTTTCACA
AAAGGGTCCTGGGCCACCTGGGGGGAAAACCTGGGTGAAAAAAATGAAAT
GGGGCCCCCCCTTTTTCTCCTTGTTACAAAGGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_e20.b1 MSMg01no371_e20.b1 CHROMAT_FILE:
MSMg01no371_e20.b1 PHD_FILE: MSMg01no371_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:41 2005
         (451 letters)



>mm_chr1_14261360_14262210
          Length = 851

 Score =  857 bits (443), Expect = 0.0
 Identities = 449/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttggcaggaatgtttctgtcttccctctgtgggaattaaggacagttgttcatttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcttggcaggaatgtttctgtcttccctctgtgggaattaaggacagttgttcatttgca 592

                                                                       
Query: 61  tgattgcctttaattataattaagaccagtggcctacctctgtgttgccaggtctcagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgattgcctttaattataattaagaccagtggcctacctctgtgttgccaggtctcagtc 532

                                                                       
Query: 121 tggaatgagtggaccatcctggtgcttggggaagtatttgaggcccaaagtaaattattt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 531 tggaatgagtggaccatcctggtgcttgaggaagtatttgaggcccaaagtaaattattt 472

                                                                       
Query: 181 ttctgtaattttataaaatataaacttgcatttattacataacaatataaattcaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttctgtaattttataaaatataaacttgcatttattacataacaatataaattcaaatgt 412

                                                                       
Query: 241 aatttagcctacatttagaagaattacacttaaatatttaaaaattagtgggaataaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aatttagcctacatttagaagaattacacttaaatatttaaaaattagtgggaataaaag 352

                                                                       
Query: 301 gagctactggtcacattcacaggtttcttaatcattctactgtttttgaggttgagttct 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gagctactggccacattcacaggtttcttaatcattctactgtttttgaggttgagttct 292

                                                                       
Query: 361 ttaatattctactgtcttaatgcttcctttccagaaagatctagatcagtggctctccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttaatattctactgtcttaatgcttcctttccagaaagatctagatcagtggctctccac 232

                                          
Query: 421 ctgtgggttgccacccccatgagggtcacat 451
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctgtgggttgccacccccatgagggtcacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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