Query= MSMg01no371_g15.b1 MSMg01no371_g15.b1 CHROMAT_FILE:
MSMg01no371_g15.b1 PHD_FILE: MSMg01no371_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:51 2005
(468 letters)
>mm_chr4_88860347_88861214
Length = 868
Score = 687 bits (355), Expect = 0.0
Identities = 417/438 (95%), Gaps = 2/438 (0%)
Strand = Plus / Plus
Query: 1 tgatattactaaccaggctattacaaaaggaaaagcagtagtcacccttacattattaac 60
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgatactactacccaggctattacaaaatgaaaagcagtagtcacccttacattattaac 260
Query: 61 tcacagctctttacttagttacgttttacacataaagtagtttgcttgcatgtatgtctg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 261 tcacagctctttacttagttacgttttacacatgaagtagtttgcttgcatgtatatctg 320
Query: 121 tacatcttatgtataaaatgctggcagagcctagaagagggcattgaatttaatggaaca 180
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct: 321 tacatcttatgtgtaaaatgctggcagagcctagaagagggcattgaattcactggaata 380
Query: 181 ggaattatagaaggttgtgatctgccatgtgggtgctgggaactgaaagccctc-gtcct 239
|| |||| ||||||||||||||||||||||||||||||||||| |||||||| | | |||
Sbjct: 381 gggattacagaaggttgtgatctgccatgtgggtgctgggaacggaaagccc-ctgccct 439
Query: 240 ccagtcctctgaaagagcaacgaatgctcttcaccaccaattaactcatggctcttagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccagtcctctgaaagagcaacgaatgctcttcaccaccaattaactcatggctcttagaa 499
Query: 300 tttaaaccctgagatgaataactctgacacaaatcaagatcattatggattcccccggaa 359
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 tttaaaccctgagatgagtaactctggcacaaatcaagatcattatggattcccccggaa 559
Query: 360 gatggcatgagctgcatttgagtttgaataataaccatgtaactcatttcctgtctattt 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 560 gatggcatgagctgcatttgagtctgaataataaccatgtaactcatttcctgtccattt 619
Query: 420 tcctctggngcagttttt 437
|||||||| | |||||||
Sbjct: 620 tcctctggtgtagttttt 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_g15.g1 MSMg01no371_g15.g1 CHROMAT_FILE:
MSMg01no371_g15.g1 PHD_FILE: MSMg01no371_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:51 2005
(487 letters)
>mm_chr1_190278813_190279698
Length = 886
Score = 830 bits (429), Expect = 0.0
Identities = 465/483 (96%), Gaps = 11/483 (2%)
Strand = Plus / Plus
Query: 5 gaattctcacctgtcactagaaggagtgtacgggatgatagcgggaagatggttttgtcg 64
||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 215 gaattctcacctgccaatagaaggaatgtacgggatgatagcgggaagatg--------- 265
Query: 65 ttttttgttttccgtgtaaaatgcgccatttgcaggtatattcagatcagcgagacgaaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 -tttttgttttccgtgtaaaatgcgccatttgcaggtatattcagatcagcgagacgaaa 324
Query: 125 gattagcttttatttgcctgaaagcaaagcttaataaccacttcacgtctcttatttcca 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gattagcttttatttgcctgaaagcaaagcttaataaccacttcatgtctcttatttcca 384
Query: 185 gtaggtgtttgtgcttctttcccatgtacatgccttaagattaaacatctacataagact 244
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaagtgtttgtgcttcttccccatgtacatgccttaagattaaacatctacataagact 444
Query: 245 cataggctggacgtcatagaaataagctgaagcaggacttctgtgtagtcaagcctgcac 304
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 445 cataggctggacgtcatagaaataagccgaagc-ggacttctgtgtagtcaagcctgcac 503
Query: 305 tggaaaggaatgaaagttgactacccactatattgatctctctgctctattacttctgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggaaaggaatgaaagttgactacccactatattgatctctctgctctattacttctgtg 563
Query: 365 aactgcagggtgacttgctgtgggtttgtagcccatttaactgttacctcccagtggagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aactgcagggtgacttgctgtgggtttgtagcccatttaactgttacctcccagtggagg 623
Query: 425 gatggaagcttgccattcaatagcattgtcgtagaaagtcacaaatcaaaataggcattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatggaagcttgccattcaatagcattgtcgtagaaagtcacaaatcaaaataggcattt 683
Query: 485 cgc 487
|||
Sbjct: 684 cgc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
