BAC Information

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BAC

Clone NameMSMg01-371G21
Chromosome1 (Build37)
Map Location 70,606,417 - 70,606,751
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneIkzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371G21.T7 (MSMg01no371_g21.b1)MSMg01-371G21.TJ (MSMg01no371_g21.g1)
ACCAG477939AG477940
length755777
length of high quality
(start - end)		427 (80 - 506)453 (52 - 504)
definitionCHROMAT_FILE: MSMg01no371_g21.b1 PHD_FILE: MSMg01no371_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:52 2005CHROMAT_FILE: MSMg01no371_g21.g1 PHD_FILE: MSMg01no371_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTGCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATCCAGTTTATTTTCCCT
TGAGAGGCCTTGAAAGACGCCCCCTTTTGGACTGTCAAAAATTTGCTACT
CTGAGATTTGTGCAACGTAGTCTGTATTAACTACAACATTGTTAATCATT
TCCAAAAAGGAAACATCTCTTCCTCATATTTATATTTCTGGTCAATATTA
GAAGAAGTGTTTAACTTAACTAGCTTAAAATATATAATTAGGAATACATG
TTTTATTATAATGGACACATCTTTTGGTAGGGGAAGTGCTTGATCTTGTG
TACTTTAAATCCTAGCTTCAGAATCACTCTAATTGCTTTAAATTCTACTG
CTAAATGATTTTCTCTTTTTTTTTTTCATTTCCAATTTTTTAAAATATTT
TTATTAGGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCC
CCATACCCTCCCCCACACCGGTACCACCCACTCCCAATTTTTTGGCCTGG
CATTCCCCTGTAATGGGGCATATAAAGTTGCATGTCCAATGGGCCTCTCC
TTCAACTGATGGGTGGACAAGCCCACTTTTGAAACATATGCAGCTAGAAA
CAAAAGTTCCCGGGAACAGGGAATTCCAAAAGGTGTTGGCCCCTAAGGGT
TGTGAAAACCTTTTATCTCTTGGAAATTTTTTCTAGATCCCCCCTGGGGG
GTCGG

NTTTAACGGGNNNNNNNNNNNNNGNNNNNNGANTNANTATAGTTTCAGGA
TCCGCGGAATTCAGTCTGGTGTTTCCTCAGAAAATTGGGCATAATACTAC
CGAAAGATCCAGCAATTCCTCTCCTGGGCATATACCAAGAAGATGTTCCA
TCTCGTAATAAGGACACATGCTTTACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGAAAAGAACCCAGATGTCCCTCAACAGAGGAATGGA
TACGGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAA
AACAATGAATTTATGAAATTCTTAGGCAAATGAATGGATCTGGAGGATAT
TATCCTTAGTGATGTAACCCAATCACAAAAGAATTCACATGATATGCACT
CACTGATAAGTGGATATTAGCCCAGAAACTTAGAAGACCCAAGATAAATT
TTGCAAAACACAAGAAAATCAAGAAGAAGGACCAGTGTGTGGATACTTCC
GTCCTCCTTAGAATAGGGAACAAAACACCCATGGAAGGAGTTAAAGAGAC
CAAGTTTGGAGCTGAGTCGAAAGGATGGACCATCCAGAGACTGCCCTACC
CCGGGAATCCTTCCCTTAATGAGCCCCCCAAATGCGGACCCTTATTGTTT
ATGTCACCAAAATTTTTGCTTGAAAGGACCCTGAAAAAACTGGCCTTGTG
TGGAGGGTAATTCCAGGGCTGGGCAAATAAAAAAAAGGAAAGGCTCACCA
CCCCCCTTTGGTAGGGGAAGGCGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_g21.b1 MSMg01no371_g21.b1 CHROMAT_FILE:
MSMg01no371_g21.b1 PHD_FILE: MSMg01no371_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:52 2005
         (427 letters)



>mm_chr1_70606214_70607040
          Length = 827

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   atccagtttattttcccttgagaggccttgaaagacgcccccttttggactgtcaaaaat 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 538 atccagtttattttcccttgagaggccttgaaagacgcccctttttggactgtcaaaaat 479

                                                                       
Query: 64  ttgctactctgagatttgtgcaacgtagtctgtattaactacaacattgttaatcatttc 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttgcgactctgagatttgtgcaacgtagtctgtattaactacaacattgttaatcatttc 419

                                                                       
Query: 124 caaaaaggaaacatctcttcctcatatttatatttctggtcaatattagaagaagtgttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaaaaggaaacatctcttcctcatatttatatttctggtcaatattagaagaagtgttt 359

                                                                       
Query: 184 aacttaactagcttaaaatatataattaggaatacatgttttattataatggacacatct 243
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aatttaagtagcttaaaatatataattaggaatacatgttttattataatggacacatct 299

                                                                       
Query: 244 tttggtaggggaagtgcttgatcttgtgtactttaaatcctagcttcagaatcactctaa 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 298 tttggtaggggaagtgcttgatcttgtatactttaaatcctagcttcagaatcactctaa 239

                                              
Query: 304 ttgctttaaattctactgctaaatgattttctctt 338
           |||||||||| |||||||||||||| |||||||||
Sbjct: 238 ttgctttaaactctactgctaaatggttttctctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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