BAC Information

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BAC

Clone NameMSMg01-371H16
Chromosome1 (Build37)
Map Location 23,404,706 - 23,593,762
singlet/doubletdoublet
Overlap geneLOC665782
Upstream geneRims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371H16.T7 (MSMg01no371_h16.b1)MSMg01-371H16.TJ (MSMg01no371_h16.g1)
ACCAG477977AG477978
length766775
length of high quality
(start - end)		445 (73 - 517)226 (326 - 551)
definitionCHROMAT_FILE: MSMg01no371_h16.b1 PHD_FILE: MSMg01no371_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:56 2005CHROMAT_FILE: MSMg01no371_h16.g1 PHD_FILE: MSMg01no371_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,404,706 - 23,405,150)(23,593,537 - 23,593,762)
sequence
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTTTTCTATCGCCCTCCTGAAACTGC
TCCAAGTCATTGAATGAGCTTCAGTGTTTCTATAACATGTCAGTCTTCTT
GCTAAATATATCACTTCCATGACTGAATTTGCCTTTGTGCCTGGTGCCCG
CCATTTTCAGAAAGTCACACAGCCATCTCCCCATCTCCCCAATCCCCCAA
CTCCCTTAAGGGGTTCATCTTATTGTGGTATCAATTTGAAAATACCAGAT
CTCTTCCATGATGGCTGCCATTTGGTACCTTCACCTTCATCCTCTAAGGA
GGTTCTACAATTAACAAGAACATCTGGAGATGGATCTTTTTATTTTCATA
CTTCAGAAGATGTGCTACATTCAGTACTTTCTCTAGCAAATCAAAGACAG
GTTTTTCAAGTGAAAATTAGGGCTGTAACTCTTCTGAGAAAATGCCCAGC
ACTGGTGTGGTATGGTGGTGGTATGGTGNNNNNNNNTNNTTNTTNNTTTT
TTTTTTTNTTTTTTNNTTNTTTTTNTTTTTTTTTTTTTTTNTTTTTTNNT
TTTTTNTTTTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNNTTTTTTNTTTTTNTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTT
TTTNNTTNNTNTTTTN

TCATAATTGCGGCCGCTATACGACTCCTATTTTCCACAGATCCGCGGAAT
TCACCTCCACTTATAGAATTACTCTTTTGACATANAATCTTTCCCAGCAG
TTAAGGAACCTTGAACTGGGATTAAGAGCCTAGACCTGACTTCCAGGTTG
TAAATGGGAGAGTAACTGTCTGGGTGTAGGTGAGGAAACCAGACCAAAAG
GCTTCAACCAGAGGAAAACTAAACAAAGCAACACACCCCCCAAACAAATA
AACAAACCAACAAAACAACAACAAACCACCCCAGATTTGGGCTTCTTCTT
GCTTATTAGAAAATAAACATCTCATATAAGACCTTACAGAGCCTTGTACC
AATTTCTATAATGTCACCTATAACTACCTTATTGGACTGGCTTATTTGGA
CTCAAGGCTCAGATTTGATCTATCAACCAGGTTGAAAGCGTTTACGGGCA
GGCTATCTCTTAGCAGTTTTGGTACCCCCACCCCCGCAAGATTCAACAGA
GTATTGTATAAAGAGTATAATGTGTACATGTGTTTGCATGCATGTATGTA
TGTATGTATGCATGTATGCATGTATGCACGCTCTCCTCTCTCTTCTTCTT
CTGCTTTCCTCTCTTACTCTTTTCCTTTTACTCCTTTCCTTTATCTATTT
CTCCTTTTTCTTCTTGTTTCCTCCTTTTTCTTTTCTTTGCTATAGTCCCG
TTTTTCCCGTTTACATTATGTCCCCCTCTTCTTGTCCCGTTGTTCTTCCT
ATCATATGTATACTTACATTTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_h16.b1 MSMg01no371_h16.b1 CHROMAT_FILE:
MSMg01no371_h16.b1 PHD_FILE: MSMg01no371_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:56 2005
         (445 letters)



>mm_chr1_23404506_23405350
          Length = 845

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttttctatcgccctcctgaaactgctccaagtcattgaatgagcttcagtgtttcta 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttctctatcgccctcctgaaactgctccaagtcattgaatgagcttcagtgtttcta 260

                                                                       
Query: 61  taacatgtcagtcttcttgctaaatatatcacttccatgactgaatttgcctttgtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacatgtcagtcttcttgctaaatatatcacttccatgactgaatttgcctttgtgcct 320

                                                                       
Query: 121 ggtgcccgccattttcagaaagtcacacagccatctccccatctccccaatcccccaact 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggtgcccgccattttcagaaagtcacacagccatttccccatctccccaatcccccaact 380

                                                                       
Query: 181 cccttaaggggttcatcttattgtggtatcaatttgaaaataccagatctcttccatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttaaggggttcatcttattgtggtatcaatttgaaaataccagatctcttccatgat 440

                                                                       
Query: 241 ggctgccatttggtaccttcaccttcatcctctaaggaggttctacaattaacaagaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgccatttggtaccttcaccttcatcctctaaggaggttctacaattaacaagaaca 500

                                                                       
Query: 301 tctggagatggatctttttattttcatacttcagaagatgtgctacattcagtactttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctggagatggatctttttattttcatacttcagaagatgtgctacattcagtactttct 560

                                                                       
Query: 361 ctagcaaatcaaagacaggtttttcaagtgaaaattagggctgtaactcttctgagaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagcaaatcaaagacaggtttttcaagtgaaaattagggctgtaactcttctgagaaaa 620

                                    
Query: 421 tgcccagcactggtgtggtatggtg 445
           |||||||||||||||||||||||||
Sbjct: 621 tgcccagcactggtgtggtatggtg 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_h16.g1 MSMg01no371_h16.g1 CHROMAT_FILE:
MSMg01no371_h16.g1 PHD_FILE: MSMg01no371_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:56 2005
         (226 letters)



>mm_chr1_23593337_23593962
          Length = 626

 Score =  422 bits (218), Expect = e-122
 Identities = 224/226 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagaccttacagagccttgtaccaatttctataatgtcacctataactaccttattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ataagaccttacagagccttgtaccaatttctataatgtcacctataactaccttattgg 367

                                                                       
Query: 61  actggcttatttggactcaaggctcagatttgatctatcaaccaggttgaaagcgtttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actggcttatttggactcaaggctcagatttgatctatcaaccaggttgaaagcgtttac 307

                                                                       
Query: 121 gggcaggctatctcttagcagttttggtacccccacccccgcaagattcaacagagtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gggcaggctatctcttagcagttttggtacccccacccccgcaagattcaacagagtatt 247

                                                         
Query: 181 gtataaagagtataatgtgtacatgtgtttgcatgcatgtatgtat 226
           ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 246 gtataaagagtataacgtgtacatgtgtttgcatgtatgtatgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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