BAC Information

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BAC

Clone NameMSMg01-371J14
Chromosome1 (Build37)
Map Location 94,838,100 - 95,025,119
singlet/doubletdoublet
Overlap geneCapn10, Gpr35, Aqp12, Kif1a
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1
Downstream geneAgxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371J14.T7 (MSMg01no371_j14.b1)MSMg01-371J14.TJ (MSMg01no371_j14.g1)
ACCAG478065AG478066
length770787
length of high quality
(start - end)		432 (80 - 511)478 (44 - 521)
definitionCHROMAT_FILE: MSMg01no371_j14.b1 PHD_FILE: MSMg01no371_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:06 2005CHROMAT_FILE: MSMg01no371_j14.g1 PHD_FILE: MSMg01no371_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,838,100 - 94,838,531)(95,024,645 - 95,025,119)
sequence
GATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGAGGTGGAGACAGGAGG
GTGCCTGTGGCTTGCTGAGAGACCCCACCTCATAAAATAAGGTGGGCAGC
TCCTGAGGAACTACCCCATGTCTGTCTGCCGGCCTGCTCACACATGTGTA
TGTGCCCCACCCACACATACCCACATGTAAACACAAACAATAAAATATGA
ACAAAAAAATAATCGAGAACTTATCGGTAATCACACTGGCCAGACCAACA
ACTAAGAGTTGACAAAGCCCTGGTCTTTGATCCTCAGACAGATCCTGGGA
TTCAAGGGAAGGACCAGGGTGTGTTCACTGCTGGCCATCCCGACTCCACC
GAGCCTCCCTCCTGAGGTGGGAGCTAGCCATTGGCCATAAGACTCTGTTG
GTGGTATCAGTCCTAGAGTGTGGGGAAGCTGACTCTTGAATTTTGGAGAG
CTCCTTTCTCTNGGAAAGAGCTCCTGTGACCCACTGAAGTGTCTAGGTCT
GGAATTAAAAGGGACACCAAGAATGTTAGTTGCATAGTCCCTTGAAATTA
AGCTTGTGCCTCAAAAGTCTTTCCTGCCCTCTTCCGGGCTCCCCCCTCCA
AAAAAATTCTGTTTTTCTCTTCCCGTAGCTGTCACCTCTCTTGCTGTTTC
CTTCCAATTAACTATTCCTCTCTTTCCCTACATCCTTCCTCTGCACCTAC
CGCTTTTTTTTTTTATTTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCGAGCCCAGCGGCAATAGCCTCTGGCAGGCATGGTCTGTGAGCATAC
AGATGTGTGAGGCTGTGACGTGGCTTCCACAGGACTGAGCAGGGAGCCTC
ACCTCATATTGACCCAGCTGGACCAGGGCTTGGCAAACAGAACATCCCGA
GCAGAGTAAGTGGGGCAGAGGGTCAGTTTCGTGGCCTTCACTTGCTGATG
GGTGGAGCAACCCCGGGAGAGGAGCAAAGAAGGCTGGCCCATGGGCAGCA
GGTCATGCTCTAAGCCAGGAGTGAACCCTGATACTGAGGACTGTCCTGAG
CAATGGGCAGAGGGGAAAGAGCCTGCAAGGGTTTGGGCCTCCAGCAGAGT
CACTCAGAGGAGTCCAGGTGGTTCTGGTGGCTTCAAAGCCCTGGTGGTGG
TGCTGGTAGACGTGTGTGGGGTCCAGGTGCTTCCTGACCCTTGCTGACAT
GGCTATACTGCAAGCCTGTTTGTCCAGCCAACCCAACTGTCTCAAAGCCC
TCTGACTTTATGTTCTACCCCATCTTCCTCAGAGAAGGCTGAAGGTACTT
TCTAATACAAGAAGCATCCCCCCCTACCTCACCTGTGCTTTCGTACCTAT
TGGCTTTTCTGTTGGGTCTAACTCTATGGTTGCCAGTTTCCTAAGGTTCC
TCTATTATATCCTCTCTGTGTCATACCTGTGATTCTGTTCGGTTATTCCT
ACATCTCTTCCCTGTTCATTTCTTTATTCATGTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_j14.b1 MSMg01no371_j14.b1 CHROMAT_FILE:
MSMg01no371_j14.b1 PHD_FILE: MSMg01no371_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:06 2005
         (432 letters)



>mm_chr1_94837900_94838731
          Length = 832

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggaggtggagacaggagggtgcctgtggcttgctgagagaccccacctcataaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgaggaggtggagacaggagggtgcctgtggcttgctgagagaccccgcctcataaaata 260

                                                                       
Query: 61  aggtgggcagctcctgaggaactaccccatgtctgtctgccggcctgctcacacatgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgggcagctcctgaggaactaccccatgtctgtctgccggcctgctcacacatgtgt 320

                                                                       
Query: 121 atgtgccccacccacacatacccacatgtaaacacaaacaataaaatatgaacaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgccccacccacacatacccacatgtaaacacaaacaataaaatatgaacaaaaaaa 380

                                                                       
Query: 181 taatcgagaacttatcggtaatcacactggccagaccaacaactaagagttgacaaagcc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatccagaacttatcggtaatcacactggccagaccaacaactaagagttgacaaagcc 440

                                                                       
Query: 241 ctggtctttgatcctcagacagatcctgggattcaagggaaggaccagggtgtgttcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtctttgatcctcagacagatcctgggattcaagggaaggaccagggtgtgttcact 500

                                                                       
Query: 301 gctggccatcccgactccaccgagcctccctcctgaggtgggagctagccattggccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggccatcccgactccaccgagcctccctcctgaggtgggagctagccattggccata 560

                                                                       
Query: 361 agactctgttggtggtatcagtcctagagtgtggggaagctgactcttgaattttggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactctgttggtggtatcagtcctagagtgtggggaagctgactcttgaattttggaga 620

                       
Query: 421 gctcctttctct 432
           ||||||||||||
Sbjct: 621 gctcctttctct 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_j14.g1 MSMg01no371_j14.g1 CHROMAT_FILE:
MSMg01no371_j14.g1 PHD_FILE: MSMg01no371_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:06 2005
         (478 letters)



>mm_chr1_95024442_95025319
          Length = 878

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccgagcccagcggcaatagcctctggcaggcatggtctgtgagcatacagatgt 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 678 ggaattccgagcccagcggcaatagcctctggcaggcatggtctatgagcatacagatgt 619

                                                                       
Query: 64  gtgaggctgtgacgtggcttccacaggactgagcagggagcctcacctcatattgaccca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtgaggctgtgacgtggcttccacaggactgagcagggagcctcacctcatattgaccca 559

                                                                       
Query: 124 gctggaccagggcttggcaaacagaacatcccgagcagagtaagtggggcagagggtcag 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctggaccagggcttggcaaacagaacatcccgagcagagtaagtggggcagagggtcag 499

                                                                       
Query: 184 tttcgtggccttcacttgctgatgggtggagcaaccccgggagaggagcaaagaaggctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttcgtggccttcacttgctgatgggtggagcaaccccgggagaggagcaaagaaggctg 439

                                                                       
Query: 244 gcccatgggcagcaggtcatgctctaagccaggagtgaaccctgatactgaggactgtcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcccatgggcagcaggtcatgctctaagccaggagtgaaccctgatactgaggactgtcc 379

                                                                       
Query: 304 tgagcaatgggcagaggggaaagagcctgcaagggtttgggcctccagcagagtcactca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgagcaatgggcagaggggaaagagcctgcaagggtttgggcctccagcagagtcactca 319

                                                                       
Query: 364 gaggagtccaggtggttctggtggcttcaaagccctggtggtggtgctggtagacgtgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 gaggagtccaggtggttctggtggcttcaaagccctggtggtggtgctggtagacatgtg 259

                                                                  
Query: 424 tggggtccaggtgcttcctgacccttgctgacatggctatactgcaagcctgttt 478
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 258 tggggtccaggtgcttcctgacccttgctgacacggctatactgcaagcctgttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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