Query= MSMg01no371_k18.b1 MSMg01no371_k18.b1 CHROMAT_FILE:
MSMg01no371_k18.b1 PHD_FILE: MSMg01no371_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:12 2005
(537 letters)
>mm_chr1_132814252_132815188
Length = 937
Score = 1015 bits (525), Expect = 0.0
Identities = 534/537 (99%)
Strand = Plus / Plus
Query: 1 cttaggagcacctccactctcttgtctaagttcagtttccctgatttcttcctctttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttaggagcacctccactctcttgtctaagttcagtttccctgatttctccctctttttg 260
Query: 61 gtgacactataacagctccaagggtgacttggatgggttataattctgtaaaggaaaacc 120
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 261 gtgacactataacagctccaagggtgacttagatgggttataatcctgtaaaggaaaacc 320
Query: 121 aggagtcactaggattctcagagttttaggacacatcttttgttataaaaagagttacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtcactaggattctcagagttttaggacacatcttttgttataaaaagagttacta 380
Query: 181 attcctgaaattttgaaggattatagcttggagagggaaacagcattgccttaagcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcctgaaattttgaaggattatagcttggagagggaaacagcattgccttaagcaaat 440
Query: 241 gttgttaattctgtttagaattcttgattcacagctcagtgaggcttcaaccagtcccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgttaattctgtttagaattcttgattcacagctcagtgaggcttcaaccagtcccca 500
Query: 301 ggataaggggctcctttgttttttcatatccataattatccctgtcttgcatcttgactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggataaggggctcctttgttttttcatatccataattatccctgtcttgcatcttgactc 560
Query: 361 acatttaatgtgtatgtacatcaaaccagcttggaaaaatggagtttcaaaactagctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatttaatgtgtatgtacatcaaaccagcttggaaaaatggagtttcaaaactagctat 620
Query: 421 gagcagaatcccctcttatgaaataaacccaagttccaaagaaaaccattttagggggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcagaatcccctcttatgaaataaacccaagttccaaagaaaaccattttagggggaa 680
Query: 481 aggaaaaattattgcagatgccaagaaggaaacctaatgactcctcttcccatactg 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaaaattattgcagatgccaagaaggaaacctaatgactcctcttcccatactg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_k18.g1 MSMg01no371_k18.g1 CHROMAT_FILE:
MSMg01no371_k18.g1 PHD_FILE: MSMg01no371_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:12 2005
(486 letters)
>mm_chr1_132996218_132997102
Length = 885
Score = 710 bits (367), Expect = 0.0
Identities = 402/415 (96%), Gaps = 4/415 (0%)
Strand = Plus / Minus
Query: 5 gaattccagagaccatctcagctctggccctgttatctcctctggccaggtgtccaggag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaattccagagaccagctcagctctggccctgttatctcctctggccaggtgtccaggag 352
Query: 65 actgtctcagctctggagctctcctccctagttcagggtcatcattgactaaaggcccat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actgtctcagctctggagctctcctccctagttcagggtcatcattgactaaaggcccat 292
Query: 125 tgtctgtggctccttccttctgaggagcccagtatgctgcccagggaattgaaaaatttt 184
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 291 tgtcagtggctccttccttctgaggagcccagtatgctgctcagggaattgaaaa-tttt 233
Query: 185 tatttctaaggtttgtatacctctcacaccttcttctcctcctcctcctcctcctcttgc 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 232 tatttctaaggtttgtatacctctcacaccttcttctccttctcctcctcctcctcttgc 173
Query: 245 atctcctcctcctcctccccccttcccccctcttcagattgatttatttattgttatatg 304
|||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct: 172 ttctcctcctcctcc---ctccttcccccctcttcatattgatttatttattgttatatg 116
Query: 305 taagtacactgtagctgtcttcagacacaccggaagagagtgtcagatctcattacagat 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 115 taagtacactgtagctgtcttcatacacaccggaagagagtgtcagatctcattacagat 56
Query: 365 ggttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagagc 419
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 55 ggttgtgagccaccatgtgattgctgggaattgaactcaggacctctggaagagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
