Query= MSMg01no371_m01.b1 MSMg01no371_m01.b1 CHROMAT_FILE:
MSMg01no371_m01.b1 PHD_FILE: MSMg01no371_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:19 2005
(522 letters)
>mm_chr1_73839932_73840853
Length = 922
Score = 1002 bits (518), Expect = 0.0
Identities = 521/522 (99%)
Strand = Plus / Plus
Query: 1 caggagacattgcggcctagtagaacttactctgcccaaagcagatatgaaggcagccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagacattgcggcctagtagaacttactctgcccaaagcagatatgaaggcagccaa 260
Query: 61 accaagcagagattgttagctgagttatcctgctttctagaatagtccgaatgttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaagcagagattgttagctgagttatcctgctttctagaatagtccgaatgttttttt 320
Query: 121 tccatgcttctaattgcatgttctgactaatcatataagctcacttcctccttttgaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatgcttctaattgcatgttctgactaatcatataagctcacttcctccttttgaaag 380
Query: 181 agggtggaagggtccctcataaacagaacagcccaccaaaatcccttacataaaaataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtggaagggtccctcataaacagaacagcccaccaaaatcccttacataaaaataat 440
Query: 241 tcatagcttgggaagatatgcagaattcctctggctctatggtccataacctgcaaaatg 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tcatagcttgggaagatatgcagaattcctctggctctgtggtccataacctgcaaaatg 500
Query: 301 tctgtggacctaatcttaaacttccttctttttccatattttgagagataagtcccctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtggacctaatcttaaacttccttctttttccatattttgagagataagtcccctaa 560
Query: 361 atctcttttaatactcccagctgtggtcaatgcgctccagagctctcaaagccccaaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctcttttaatactcccagctgtggtcaatgcgctccagagctctcaaagccccaaacc 620
Query: 421 tactgatgtgggcaatgaaccctccagttctctgcttccgccatgagaggggggatctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactgatgtgggcaatgaaccctccagttctctgcttccgccatgagaggggggatctgg 680
Query: 481 ctccaaaagcaaagcaacaaatgcatattcctacccggaggt 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctccaaaagcaaagcaacaaatgcatattcctacccggaggt 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_m01.g1 MSMg01no371_m01.g1 CHROMAT_FILE:
MSMg01no371_m01.g1 PHD_FILE: MSMg01no371_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:19 2005
(454 letters)
>mm_chr1_74070884_74071738
Length = 855
Score = 772 bits (399), Expect = 0.0
Identities = 441/455 (96%), Gaps = 1/455 (0%)
Strand = Plus / Minus
Query: 1 ttgccttttgccatcttctcctttaagtaccccccttctgtcccctttaagtaccctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgccttttgccatcttctcctttaagtaccccccttctgtcccctttaagtaccctctt 501
Query: 61 cacactgtcttctgccccctttcagagccttctcacctggggcagtggcctctttcagga 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacactgtcttctgtcccctttcagagccttctcacctggggcagtggcctctttcagga 441
Query: 121 agccctcctggctcccaa-ccccccgccccagatcttgctctcttgcttgctctctcatt 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agccctcctggctcccaacccccccgccccagatcttgctctcttgcttgctctctcatt 381
Query: 180 ggctaggaagctatcaggctgctgcaggggcctgggcatttgcttcagctgagcactgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggctaggaagctatcaggctgctgcaggggcctgggcatttgcttcagctgagcactgca 321
Query: 240 ggtcacacattgttcatctcagtttgctgtcccttcccgagcctcagaagccatggcctc 299
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtcacacattgctcagctcagtttgctgtcccttcccgagcctcagaagccatggcctc 261
Query: 300 catgaaaggctccctatggtccttactgggcagaacagagtctgtcttgaggtgtcctgg 359
||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 260 aatggaaggctccctatggtccttactgggcagaacagaatccgtcttgaggtgtcctgg 201
Query: 360 ggcagagctatgcttccatgcttgttctttgctggtgtgtgagcttaggctgcacacgtg 419
||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct: 200 ggcagagttatgcttccatgcttgttctttgctggtgtgtgaccttaggctgcggatgtg 141
Query: 420 gcttctctgtgcctcggttttccttgtctgtgaaa 454
|||||||||||||||| ||||||||||||||||||
Sbjct: 140 gcttctctgtgcctcgcttttccttgtctgtgaaa 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space: 375180
Effective search space used: 375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
