BAC Information

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BAC

Clone NameMSMg01-372B15
Chromosome1 (Build37)
Map Location 102,630,674 - 102,631,171
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372B15.T7 (MSMg01no372_b15.b1)MSMg01-372B15.TJ (MSMg01no372_b15.g1)
ACCAG478444AG478445
length740745
length of high quality
(start - end)
550 (42 - 591)498 (70 - 567)
definitionCHROMAT_FILE: MSMg01no372_b15.b1 PHD_FILE: MSMg01no372_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:46 2005CHROMAT_FILE: MSMg01no372_b15.g1 PHD_FILE: MSMg01no372_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGCTTTCACTACTTTTGATGAACGATTGAAATGTGTCATATTACAGTG
TGAATGAAATAATCTTTTTCCTTCCCAAGTTGTTTTAGCTTATGGTGCTG
TTTATGACAAATAGTAACTGTAATTAAGACAAACTGGAACCAGGAGTAAG
ATAGTATTGTGTCACACTTAACAATGTTGTTCTTTGGAGTATGGTGAAAG
CCCTGGAAAATACACTGAGTGTTAAAGACCCAGTGACCTGGTCTGCATGA
ACTTGGACAGCATTATTGTTGAGAGCAGTAAAGAAACTGAAGGACTGGCT
TGCTTGTGATGTTTCAGAGGGATGCTCAGATGTTACTGAATCATTTATTT
AAAGAATTGTGGTGTCTTGAGAAGGAACTAAAAAAAATCACATGAAATTA
ACAAGAGACAATAACCCACTGCAATATAACATTTTTTTTATTTTTATTTT
TGGCTGGGACAAGGAATGCTGGTCAACTAGAGTTGAAGAATGAGCTGTCA
TTAAGACCAGCATCATCAAATTGAAATATTTTGGGAAGTACACAGAAGAG
TCAGTGCACAGAAGTTGTGTTCCAGAGGCAGCTGATATTATAATTTTTGC
TGGCACATGAACTTGGTAATATAAAAGTCACCCAGGTTGTAATGATTTGT
AAGTATGACGGGATCTGCTGAAGCTTCCCCTGTATACCAA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGGCCTGTATCCCATTTTTCATAG
TGTTATTTCTAATATCTGTTGGGATAGGGGTTCTCTATAACTTAATGCAT
TAACTTTCTGTCTCTTACTTTCTTGCATTTAAGATTAAGGCCTAAATTTC
TTTATTCCCCCATTCATGTTTAAAAGCATTTAAAGCAATTACCATTTTTT
TCCTTCTATGCTTGAACAGATAGCATTTTCTTGACTTGTATTTTTCCCTG
CTAAGGAAATTAATATCTCTTAATTATTATTTGTTGAGATAGTATTTCTC
CCTATTTCCATGACTTTGTTTCCTCCATTTGAGATAAATTCCCTAATCTC
CCCTAAAACGGCCATACAACTCCAGTAAGTTATATGTTTTCTTGACCACA
TAGAAAATGGCAATGTCAGAAAACATTACATTGCTTTAACCAATACACAC
AGCAAGACACTGAACCATTCCTACAGTCCCAACAAGTGGCACAAGTGATA
GAGGAAACTAATACAGTCTCAAACAATAACCAAAAAAAAAAAACCCCCAA
AACAAAAACTAAAACAAACAATTAGCATATCCCTTAACAGTAAAAGTAAA
AAAAAAATTAAAATATTTGAGCTGACAAACCATCATAAAATTCCCACTTG
AACCATAATTGAAAGAAAGGGAATTGGGAACATCCCACAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_b15.g1 MSMg01no372_b15.g1 CHROMAT_FILE:
MSMg01no372_b15.g1 PHD_FILE: MSMg01no372_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:47 2005
         (498 letters)



>mm_chr1_102630474_102631371
          Length = 898

 Score =  955 bits (494), Expect = 0.0
 Identities = 497/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttaggcctgtatcccatttttcatagtgttatttctaatatctgttgggataggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tttgtttaggcctgtatcccatttttcatagtgttatttctaatatctgttgggataggg 639

                                                                       
Query: 61  gttctctataacttaatgcattaactttctgtctcttactttcttgcatttaagattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gttctctataacttaatgcattaactttctgtctcttactttcttgcatttaagattaag 579

                                                                       
Query: 121 gcctaaatttctttattcccccattcatgtttaaaagcatttaaagcaattaccattttt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 gcctaaatttctttattcccccatgcatgtttaaaagcatttaaagcaattaccattttt 519

                                                                       
Query: 181 ttccttctatgcttgaacagatagcattttcttgacttgtatttttccctgctaaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttccttctatgcttgaacagatagcattttcttgacttgtatttttccctgctaaggaaa 459

                                                                       
Query: 241 ttaatatctcttaattattatttgttgagatagtatttctccctatttccatgactttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttaatatctcttaattattatttgttgagatagtatttctccctatttccatgactttgt 399

                                                                       
Query: 301 ttcctccatttgagataaattccctaatctcccctaaaacggccatacaactccagtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttcctccatttgagataaattccctaatctcccctaaaacggccatacaactccagtaag 339

                                                                       
Query: 361 ttatatgttttcttgaccacatagaaaatggcaatgtcagaaaacattacattgctttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttatatgttttcttgaccacatagaaaatggcaatgtcagaaaacattacattgctttaa 279

                                                                       
Query: 421 ccaatacacacagcaagacactgaaccattcctacagtcccaacaagtggcacaagtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccaatacacacagcaagacactgaaccattcctacagtcccaacaagtggcacaagtgat 219

                             
Query: 481 agaggaaactaatacagt 498
           ||||||||||||||||||
Sbjct: 218 agaggaaactaatacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)