Query= MSMg01no372_c04.b1 MSMg01no372_c04.b1 CHROMAT_FILE:
MSMg01no372_c04.b1 PHD_FILE: MSMg01no372_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:49 2005
(589 letters)
>mm_chr1_34248495_34249477
Length = 983
Score = 992 bits (513), Expect = 0.0
Identities = 570/607 (93%), Gaps = 30/607 (4%)
Strand = Plus / Minus
Query: 5 gaattcctgcttttccttcggagatactttcctccacacaagcatcacttagccggacct 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaatgcctgcttttccttcggagatactttcctccacacaagcatcacttagccggacct 593
Query: 65 ccagactggcagctggaggccagtcttcttggggaccgactgacttctcccctgcattat 124
| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 592 c------ggcagctggaggccagtcttcttggggacggactgacttctccccagcattat 539
Query: 125 ttacagagcataagttatctttcacggtaggaggagctactaaggcacagcttggggtat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttacagagcataagttatctttcacggtaggaggagctactaaggcacagcttggggtat 479
Query: 185 gttcgttgggttccagcatatccacatgtatacacttatcacaatgtcctaaagaagtac 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 gttcgttgggttccagcatatccacgtgtatacacttatcacaatgtcctaaagaagtac 419
Query: 245 acggaccagtctctttctctggtcctccagtgagggagtcttctttcacttggctcttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acggaccagtctctttctctggtcctccagtgagggagtcttctttcacttggctcttca 359
Query: 305 tctcagaggatgttacagctgaagtcaagtcagcacgagtcactttagaagctggggtgt 364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctcagaggctgttacagctgaagtcaagtcagcacgagtcactttagaagctggggtgt 299
Query: 365 caaatatttctgcaagagtctcaagcaggacaggactttccgtaagccccgtttgcacat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 caaatatttctgcaagagtctcaagcaggacaggactttccgtaagccccgtttgcacat 239
Query: 425 tcttcgcttcaccttcaaga------------gtcatggttgttgtgtgcggagcccctc 472
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 238 tcttcgcttcaccttcaagagtcatggttgttgtcatggttgttgtgtgcggagcccctc 179
Query: 473 tgtggctaagttcctcggtgtgtgccagtagagggggaacctgactcttacccatgttga 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 178 tgtggctaagttcctcggtgtgtgtcagtagagggggaacctgactcttacccatgttga 119
Query: 533 ggctctctgtcgcacttccattcggg------------tccctttcttctcctcctcctt 580
|||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 118 ggctctctgtcgcacttccattcgggaagggttcgagatccctttcttcttctcctcctt 59
Query: 581 cctctgg 587
|||||||
Sbjct: 58 cctctgg 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 983
Length adjustment: 10
Effective length of query: 579
Effective length of database: 973
Effective search space: 563367
Effective search space used: 563367
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_c04.g1 MSMg01no372_c04.g1 CHROMAT_FILE:
MSMg01no372_c04.g1 PHD_FILE: MSMg01no372_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:49 2005
(506 letters)
>mm_chr1_34053373_34054278
Length = 906
Score = 955 bits (494), Expect = 0.0
Identities = 503/506 (99%)
Strand = Plus / Plus
Query: 1 aaaaaactcagccatgcacagtatgagcaagcagaagggccatgagtgcgcagggctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaactcagccatgcacagtatgagcaagcagaagggccatgagtgcgcagggctggg 260
Query: 61 ctctggacatggagaatgagagagtgagtttcttcattagcaccttgggcttatttcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggacatggagaatgagagagtgagtttcttcattagcaccttgggcttatttcatc 320
Query: 121 tcatgctcatagacagtaagaggtcagaggaattatagttattgttatttttgtggtttt 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tcatgctcatagacagtaagaggtcagaggaattataggtattgttatttttgtggtttt 380
Query: 181 tgagactaataatataatggcttgtaagaagcttcgagactaacaagaacataatgtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagactaataatataatggcttgtaagaagcttcgagactaacaagaacataatgtatc 440
Query: 241 tatttccacgcacaggacacagctcttgtgacaaccgcgacaatgcacgaatggtgtatg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tatttccacgcacaggacacagctcttgtgacaaccgagacaatgcacgaatggtgtatg 500
Query: 301 cactccgttctctgtaaagttctatcagatgtatgccaaagcattgaggaatgggagggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactccgttctctgtaaagttctatcagatgtatgccaaagcattgaggaatgggagggg 560
Query: 361 acatttgtggcttcaagttgtgccccactcctcaggactgacccctggagccttctggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatttgtggcttcaagttgtgccccactcctcaggactgacccctggagccttctggct 620
Query: 421 gcttctgttactgtgtgacacccggattctttgaaacgttgactctgtgatctgtaccac 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttctgttactgtgtgacacctggattctttgaaacgttgactctgtgatctgtaccac 680
Query: 481 ccattatttatttctcagtggatcct 506
||||||||||||||||||||||||||
Sbjct: 681 ccattatttatttctcagtggatcct 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
