Query= MSMg01no372_j07.b1 MSMg01no372_j07.b1 CHROMAT_FILE:
MSMg01no372_j07.b1 PHD_FILE: MSMg01no372_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:21 2005
(484 letters)
>mm_chr1_188838878_188839761
Length = 884
Score = 783 bits (405), Expect = 0.0
Identities = 469/493 (95%), Gaps = 11/493 (2%)
Strand = Plus / Plus
Query: 1 gtggttgtttttaattttgggtattttgttttgttttgttttgttttgttt-----gtaa 55
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 196 gtggttgtttttaattttgggtattttgttttgttttgttttgttttgttttgtttgtaa 255
Query: 56 catggtattttctgccttctgactctcgtgtact-ccatacaaattcttcccacaatagt 114
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 256 catggtattttctgccttctgactttcgtgta-tgccatacaaattcttcccacaatagt 314
Query: 115 gaagccattattggtattaacactcaactggaagttcactatttaatacaattatgtaat 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaagccataattgatattaacactcaactggaagttcactatttaatacaattatgtaat 374
Query: 175 ttctgtaagttaaggtaaaatttgtaattatatacttttcataatattttattatttggg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttctgtaagttaaggtaaaatttgtaattatatacttttcataatattttattatttggg 434
Query: 235 agtgtcatatcatgaactccaagcaccctcactttccagtgctcccaagtccccacccaa 294
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 435 agtgtcatatcatgaactccaagcaccctcactttccagtgctccaaagtccccacccca 494
Query: 295 tccttgggactccctttctgcagggggaaagaaaaaac-caaccaaacaaacaa-caaaa 352
|||||| || |||||| ||||||||| ||| |||||| ||||||| ||| ||| |||||
Sbjct: 495 tccttgtgattcccttcctgcaggggaaaaaaaaaaaaacaaccaaccaaccaaacaaaa 554
Query: 353 aacaaatttaaaaaac-aaatccaatttgtgttgcccatacactcactggagcatagtca 411
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacaaatttaaaaaaccaaatccaatttgtgttgcccatacactcactggagcatagtca 614
Query: 412 aactcttcggtagccagactcttaaagaaaagttagtgagaccttctccctttcctcata 471
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aactct-cggtagccagactcttaaagaaaagttagtgagaccttctccctttcctcata 673
Query: 472 tgattggtttttg 484
|||||||||||||
Sbjct: 674 tgattggtttttg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_j07.g1 MSMg01no372_j07.g1 CHROMAT_FILE:
MSMg01no372_j07.g1 PHD_FILE: MSMg01no372_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:21 2005
(429 letters)
>mm_chr1_189006416_189007244
Length = 829
Score = 822 bits (425), Expect = 0.0
Identities = 428/429 (99%)
Strand = Plus / Minus
Query: 1 ccttttaataagctgagcaaagcagggcaatgcaaatctggtcgctctgctaatggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ccttttaataagctgagcaaagcagggcaatgcaaatctggtcgctctgctaatggagga 570
Query: 61 gggggaggcacactagttagaaagttagctgtgccaagcccctggcagcactgagagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggggaggcacactagttagaaagttagctgtgccaagcccctggcagcactgagagaga 510
Query: 121 ggaaaatggaaaccacacggttataaatgcctgtgcttcacagtgtcagggacctctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaaaatggaaaccacacggttataaatgcctgtgcttcacagtgtcagggacctctgag 450
Query: 181 ccatagctaaaggaagaccgcaaatattaatgacgtaatgcatgagtgttcatatgtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccatagctaaaggaagaccgcaaatattaatgacgtaatgcatgagtgttcatatgtcat 390
Query: 241 agtatgctcatatcatgataaatgcatgaacacggctctgagatctgagagtcctacctc 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agtatgcacatatcatgataaatgcatgaacacggctctgagatctgagagtcctacctc 330
Query: 301 acctaatgcaattaaaaattattcataggatttaacaataataacgtttgtttcctgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acctaatgcaattaaaaattattcataggatttaacaataataacgtttgtttcctgcat 270
Query: 361 agaaactttttttctatcgtgtctgtgcttgttttatgtgctaattttctgatagacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agaaactttttttctatcgtgtctgtgcttgttttatgtgctaattttctgatagacagg 210
Query: 421 tgactttag 429
|||||||||
Sbjct: 209 tgactttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
